RchiOBHm_Chr4g0389841
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004526
Physical Location & Seq
Forward (+)
4873928 .. 4875417
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGGGAAGAAACTCAGGTTTCGAAAAGGAGGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCAGGTTCTCCAGAACTACGTCAAAAAACACGGTCCAGGCAAATGGGGAAAAACAGCAAGGGAGACTGGCAAGTTCTTAATTTTCTTCATTTTTACTTTTGACATACAGCAGTGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGATGAAGAAGACCTTATTATCAGGATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCCACTCTAAGGAAGAAGCTGGCAGAACAGAAAGAAAAGGAATCAGAAATGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCCCCGTTGGGGACGATGGTAATCAACATTTAACCAAATGCGATGTAGTTGTTGGCGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACTGATACTACTATACTGAGTCCCAGAGTGGGAGACGGAACCGGAGGCGGGGCAAACAATAATATCGAACCAGCTGGGGATGATCTCAATTATAACGCTATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACATGTCGGAATTCCTCCAAACTGAATTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCTTGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.44

Weight (kDa)

6.26

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 76 8.2e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 90 2e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 126 2.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 86 - 134 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 513, 585, 642
AcsI RAATTY 3 cut(s) 749, 764, 802
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 589, 595
AfiI CCNNNNNNNGG 5 cut(s) 381, 465, 466, 623, 642
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 5 cut(s) 37, 220, 724, 802, 809
AhlI ACTAGT 1 cut(s) 590
AjnI CCWGG 3 cut(s) 66, 100, 698
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 2 cut(s) 391, 668
AluI AGCT 2 cut(s) 391, 668
Alw26I GTCTC 3 cut(s) 122, 199, 621
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 3 cut(s) 230, 337, 730
ApeKI GCWGC 1 cut(s) 822
ApoI RAATTY 3 cut(s) 749, 764, 802
AseI ATTAAT 1 cut(s) 831
AspS9I GGNCC 3 cut(s) 98, 231, 337
AsuC2I CCSGG 2 cut(s) 234, 336
AsuII TTCGAA 2 cut(s) 21, 770
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 69, 276
BbvI GCAGC 1 cut(s) 834
BccI CCATC 4 cut(s) 207, 463, 467, 851
BciT130I CCWGG 3 cut(s) 68, 102, 700
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 2 cut(s) 234, 336
BcoDI GTCTC 3 cut(s) 122, 199, 621
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 1 cut(s) 591
BisI GCNGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 824
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 5 cut(s) 68, 102, 234, 336, 700
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 231, 337
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 5 cut(s) 68, 102, 234, 336, 700
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 2 cut(s) 69, 276
BplI GAGNNNNNCTC 2 cut(s) 720, 752
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 2 cut(s) 21, 770
BpuMI CCSGG 2 cut(s) 234, 336
BsaBI GATNNNNATC 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 5 cut(s) 381, 465, 466, 623, 642
Bse1I ACTGG 3 cut(s) 136, 371, 540
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 68, 102, 700
BseGI GGATG 4 cut(s) 291, 455, 679, 862
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 381, 465, 466, 623, 642
BseMII CTCAG 4 cut(s) 27, 200, 218, 602
BseNI ACTGG 3 cut(s) 136, 371, 540
BseRI GAGGAG 2 cut(s) 531, 534
BseXI GCAGC 1 cut(s) 834
BseYI CCCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 232, 339, 732
BsiSI CCGG 3 cut(s) 234, 335, 636
BslFI GGGAC 2 cut(s) 482, 600
BslI CCNNNNNNNGG 5 cut(s) 381, 465, 466, 623, 642
BsmAI GTCTC 3 cut(s) 122, 199, 621
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 482, 600
BsnI GGCC 3 cut(s) 232, 339, 732
Bsp119I TTCGAA 2 cut(s) 21, 770
Bsp143I GATC 3 cut(s) 438, 562, 676
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 3 cut(s) 513, 585, 642
BspANI GGCC 3 cut(s) 232, 339, 732
BspCNI CTCAG 4 cut(s) 26, 201, 219, 603
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 634
BspT104I TTCGAA 2 cut(s) 21, 770
BsrI ACTGG 3 cut(s) 136, 371, 540
BssMI GATC 3 cut(s) 438, 562, 676
Bst2UI CCWGG 3 cut(s) 68, 102, 700
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 179, 191
BstBI TTCGAA 2 cut(s) 21, 770
BstC8I GCNNGC 2 cut(s) 58, 393
BstDEI CTNAG 5 cut(s) 13, 209, 227, 380, 611
BstF5I GGATG 4 cut(s) 291, 455, 679, 862
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 441, 565, 679
BstMAI GTCTC 3 cut(s) 122, 199, 621
BstMBI GATC 3 cut(s) 438, 562, 676
BstNI CCWGG 3 cut(s) 68, 102, 700
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 5 cut(s) 66, 100, 232, 334, 698
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 834
BstV2I GAAGAC 2 cut(s) 69, 276
BstXI CCANNNNNNTGG 2 cut(s) 108, 852
BsuRI GGCC 3 cut(s) 232, 339, 732
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 4 cut(s) 291, 455, 679, 862
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 58, 393
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 835
Cfr13I GGNCC 3 cut(s) 98, 231, 337
CseI GACGC 1 cut(s) 560
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 588, 594
CviAII CATG 2 cut(s) 742, 836
CviJI RGCY 6 cut(s) 232, 339, 391, 668, 732, 861
CviKI_1 RGCY 6 cut(s) 232, 339, 391, 668, 732, 861
CviQI GTAC 2 cut(s) 588, 594
DdeI CTNAG 5 cut(s) 13, 209, 227, 380, 611
DpnI GATC 3 cut(s) 440, 564, 678
DpnII GATC 3 cut(s) 438, 562, 676
Eam1104I CTCTTC 2 cut(s) 179, 191
EarI CTCTTC 2 cut(s) 179, 191
EciI GGCGGA 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 3 cut(s) 66, 100, 698
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 2 cut(s) 745, 839
FaiI YATR 7 cut(s) 47, 170, 608, 687, 695, 743, 837
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 434, 466
FaqI GGGAC 2 cut(s) 482, 600
FatI CATG 2 cut(s) 741, 835
FauI CCCGC 1 cut(s) 635
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 823
FokI GGATG 3 cut(s) 298, 442, 686
Fsp4HI GCNGC 1 cut(s) 823
FspBI CTAG 1 cut(s) 591
GluI GCNGC 1 cut(s) 823
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 232, 339, 732
HapII CCGG 3 cut(s) 234, 335, 636
HgaI GACGC 1 cut(s) 560
Hin1II CATG 2 cut(s) 745, 839
HinfI GANTC 4 cut(s) 331, 413, 613, 707
HpaII CCGG 3 cut(s) 234, 335, 636
Hpy188I TCNGA 5 cut(s) 183, 228, 418, 748, 815
Hpy188III TCNNGA 7 cut(s) 59, 76, 241, 283, 426, 799, 836
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 289, 822
HpyF3I CTNAG 5 cut(s) 13, 209, 227, 380, 611
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 745, 839
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 3 cut(s) 438, 562, 676
Lsp1109I GCAGC 1 cut(s) 834
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 440, 564, 678
MboI GATC 3 cut(s) 438, 562, 676
MluCI AATT 7 cut(s) 144, 220, 682, 749, 764, 802, 850
MlyI GAGTC 1 cut(s) 622
MmeI TCCRAC 2 cut(s) 726, 793
MnlI CCTC 9 cut(s) 22, 222, 509, 512, 515, 632, 722, 764, 809
MseI TTAA 4 cut(s) 143, 488, 549, 831
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 3 cut(s) 234, 335, 636
MspR9I CCNGG 5 cut(s) 68, 102, 234, 336, 700
MvaI CCWGG 3 cut(s) 68, 102, 700
MvnI CGCG 1 cut(s) 60
NciI CCSGG 2 cut(s) 234, 336
NdeII GATC 3 cut(s) 438, 562, 676
NlaIII CATG 2 cut(s) 745, 839
NlaIV GGNNCC 1 cut(s) 634
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 745
NspV TTCGAA 2 cut(s) 21, 770
PagI TCATGA 1 cut(s) 835
PciI ACATGT 1 cut(s) 741
PfeI GAWTC 3 cut(s) 331, 413, 707
PkrI GCNGC 1 cut(s) 824
PleI GAGTC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 621
PscI ACATGT 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 831
PsiI TTATAA 1 cut(s) 687
Psp6I CCWGG 3 cut(s) 66, 100, 698
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 3 cut(s) 66, 100, 698
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 3 cut(s) 98, 231, 337
PstNI CAGNNNCTG 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 668
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 589, 595
RsaNI GTAC 2 cut(s) 588, 594
SaqAI TTAA 4 cut(s) 143, 488, 549, 831
SatI GCNGC 1 cut(s) 823
Sau3AI GATC 3 cut(s) 438, 562, 676
Sau96I GGNCC 3 cut(s) 98, 231, 337
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 5 cut(s) 68, 102, 234, 336, 700
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 276
SfuI TTCGAA 2 cut(s) 21, 770
SinI GGWCC 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 590
Sse9I AATT 7 cut(s) 144, 220, 682, 749, 764, 802, 850
SsiI CCGC 3 cut(s) 513, 585, 642
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 5 cut(s) 66, 100, 232, 334, 698
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 21, 425, 660, 710, 770
TasI AATT 7 cut(s) 144, 220, 682, 749, 764, 802, 850
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 3 cut(s) 331, 413, 707
Tru1I TTAA 4 cut(s) 143, 488, 549, 831
Tru9I TTAA 4 cut(s) 143, 488, 549, 831
TscAI CASTG 1 cut(s) 182
TseI GCWGC 1 cut(s) 822
TspDTI ATGAA 3 cut(s) 142, 279, 366
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 831
XapI RAATTY 3 cut(s) 749, 764, 802
XceI RCATGY 1 cut(s) 745
XspI CTAG 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.