Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Forward (+)

45356597 .. 45357325

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTCCGGCGACGATGATCGTCACCAACACTCCGGCCGCCGATCTTTCTCTCACCTACTTCTCACCGATCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCCAGCTCTAATCGCCGACTCGTTCAGTTACATTGCGCTGAATGCGATCCAACGACGGAATGCTAGGGTTTCTAGCGGTGACTTATTATCTGTGAGCAGGTTTACTCCGCCTGATGATTTCAACCTGACTGTGCTCACTCTGGAATTGGAGTTGGTGAAAAAGGGGACTAAGAGTGAACAGGGATTTCCGTTTTGTACCTTCTTTTGGTTATCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

109

Amino Acids

11.96

Weight (kDa)

5.13

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	3 cut(s)	39, 186, 218
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	2 cut(s)	106, 116
AluI	AGCT	2 cut(s)	106, 116
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	5 cut(s)	16, 46, 57, 200, 277
BanI	GGYRCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	2 cut(s)	174, 183
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	6, 100
BmrFI	CCNGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	141
BseX3I	CGGCCG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	112
Bsh1285I	CGRYCG	2 cut(s)	39, 72
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	72
BsiEI	CGRYCG	2 cut(s)	39, 72
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	8, 35, 96
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	2 cut(s)	157, 175
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	18, 43, 69, 73, 156
BspACI	CCGC	3 cut(s)	39, 186, 218
BspANI	GGCC	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	6, 100
BspMI	ACCTGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	141
BssMI	GATC	5 cut(s)	18, 43, 69, 73, 156
Bst4CI	ACNGT	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	21, 46, 72, 76, 159
BstMBI	GATC	5 cut(s)	18, 43, 69, 73, 156
BstMCI	CGRYCG	2 cut(s)	39, 72
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 152
BstSCI	CCNGG	1 cut(s)	94
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	306
CviJI	RGCY	4 cut(s)	5, 38, 106, 116
CviKI_1	RGCY	4 cut(s)	5, 38, 106, 116
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	20, 45, 71, 75, 158
DpnII	GATC	5 cut(s)	18, 43, 69, 73, 156
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	207
EclXI	CGGCCG	1 cut(s)	36
Eco52I	CGGCCG	1 cut(s)	36
FaiI	YATR	2 cut(s)	326, 328
FaqI	GGGAC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	174, 183
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	3 cut(s)	8, 35, 96
HhaI	GCGC	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	3 cut(s)	8, 35, 96
HphI	GGTGA	5 cut(s)	16, 46, 57, 200, 277
Hpy166II	GTNNAC	2 cut(s)	213, 287
Hpy188III	TCNNGA	2 cut(s)	79, 251
Hpy8I	GTNNAC	2 cut(s)	213, 287
Hpy99I	CGWCG	2 cut(s)	16, 168
HpyAV	CCTTC	2 cut(s)	94, 319
HpyCH4III	ACNGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 152
HpyF3I	CTNAG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	5 cut(s)	18, 43, 69, 73, 156
LmnI	GCTCC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	174, 183
MaeIII	GTNAC	3 cut(s)	22, 137, 188
MalI	GATC	5 cut(s)	20, 45, 71, 75, 158
MboI	GATC	5 cut(s)	18, 43, 69, 73, 156
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	184
MspI	CCGG	3 cut(s)	8, 35, 96
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	157, 175
MwoI	GCNNNNNNNGC	2 cut(s)	122, 152
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	5 cut(s)	18, 43, 69, 73, 156
NlaIV	GGNNCC	2 cut(s)	6, 100
NmuCI	GTSAC	2 cut(s)	22, 188
PctI	GAATGC	2 cut(s)	157, 175
PkrI	GCNGC	1 cut(s)	40
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	6, 100
PvuI	CGATCG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	5 cut(s)	18, 43, 69, 73, 156
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	59, 86, 108, 118, 212, 237, 311
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	3 cut(s)	39, 186, 218
SspMI	CTAG	2 cut(s)	174, 183
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	22, 188
Tsp45I	GTSAC	2 cut(s)	22, 188
TspGWI	ACGGA	2 cut(s)	181, 288
XspI	CTAG	2 cut(s)	174, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.