Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Reverse (-)

11889494 .. 11892262

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGTATTGGTTTTTGTTACCTGGAAGTATTCAGGGAGAAGGTTGGTTACCAATATGTGAAGACAAAGATGTGTTAGATATGTTGAAGTTTATGCCAAGTAATCGGATATTGCAGATTTACATTGTTGGGGGAGGTGTAAGAAAAAAAAAGGAAGCTGAGTTAGAGGATGAGGGTGGGGGTTCTCCTAAAGAAGTTGATCACCAAAAGTATATTGGCAATGTGGTAGAAGACTTGGAAGAAGTGATTGATGGTGATCTTGGTGTGACAACTTTACATGGGGCAAAGGTTTCAAGTAAGGCAAGTGGAAAGAGAAACAAGGGAGGTAGGCCAAAGAATAAGAAGGATGTGGTTACTCACTTGACAAACCAGTTTATAAATGTCAAGGCTAGTGAGACAATTGCAGGTGATAATCTAGTGGCTGAAAATAGAAAGAGACCTAGAATGAAGCAAAAAGCATGCAAGATGAAGAAGAAATCCAGACCATATGAAACCAGATTTATGGGGGAAAAAAGTTTTGCTGAAGTAGAAGGCATTCAAGAAGAACCTGAATCTTCTGATAGTGATGATCCGAATTTTGAAGATCTAGTAGATAGTGACTACGACCTTGATGATAATGATGATGAGTTTCTGTTTAAGGCCAATGCCGATGGTGACCCTGATGCTAGTCATGAGTTCAATGAAATGGGATTTGCGGGTGACATTTCAGATGGAGAAGGTGAAGATTCTGAGAAGTTTGATAGTGGAACTGATTCAACAGCAACTGAGGATGAAGAAGAAAGAATTCAAAGTGGGCAAAGGAAAAAGAAGAAAAGGTGGTCCAAATGGAGAGAATTCCAAAAAGAAGACATGAAGAATCCTCAATTTGAGCTCGGCATGTCATTTCCAAATTCAGATGTGTTCAAGGATGCTGTTAGGGTGTTCTCAGTGAAGACAAAAAAATTGCTCACATTTAAAACCAATGATAGGAAAAGGGTGGAGGTGGTGTGCATAACAAGTGAAGGCTGTCCATTTAGGATTTGGGCTTCTGTTAATGGCAAAGTTTCACCTACATTCTACATAAAGACAATAAACATGGAGCACAAATGCAGTCAGTTGACCAGAAAGAACTATCATTGCAATGCTCCATTTATTGCTAAAGGTTACATCGATTCTTTCATGGTAGATAAGAATTGGTCAAGGGAAGGCATACAAGCTGCTGTGCAAAGAGATTATGGTATGACACCCGGTTACCAGATGTGTTACAGGGCTAAAAAAAGGGCAGCAAGGATTGCAGAAGGTACAGTTGAGGATCAATACAATCTGTTAGAGTCCTATGCAGCAGTTCTAAAGAAGACAAACCCTAACACTTCAGTGTGGATTGAAAGAGATGTAAAGGGTGAAAATGTTAGAAGGTTCAAAAGAATATACATATGCTTTGGTGCTATGAAGAAGGGATGGATAGAAGGCTGCAGACCAATAATTGGTGTTGATGGATGCCATTTGAAGACCGTACACAAAGGGCAATTACTGACAGCTGTTGGCATAGACGGGAACAATTTCATGTACCCTATAGCATGGGCTGTCGTTGAGAAAGAAACAAGGGAAGCATGGACATGGTTCTTCAAGTTTCTCAAAGATGATTTGTGCCTCGTAAATGACTACACCTATGTGTTTATGAGTGACAAGCAAAAGGGATATTGGAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

562

Amino Acids

64.29

Weight (kDa)

6.52

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	287 - 344	1.7e-09	MuDR family transposase
MULE	PF10551	487 - 557	3.1e-08	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	1460
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	2 cut(s)	560, 1296
AcsI	RAATTY	4 cut(s)	571, 780, 830, 886
AcuI	CTGAAG	2 cut(s)	540, 1332
AfaI	GTAC	3 cut(s)	1279, 1491, 1544
AfiI	CCNNNNNNNGG	2 cut(s)	963, 1460
AjnI	CCWGG	1 cut(s)	19
AleI	CACNNNNGTG	2 cut(s)	1349, 1646
AluBI	AGCT	4 cut(s)	155, 868, 1193, 1514
AluI	AGCT	4 cut(s)	155, 868, 1193, 1514
Alw21I	GWGCWC	2 cut(s)	870, 1080
Alw26I	GTCTC	2 cut(s)	386, 427
AlwI	GGATC	2 cut(s)	560, 1296
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	2 cut(s)	326, 636
ApeKI	GCWGC	4 cut(s)	1193, 1259, 1316, 1446
ApoI	RAATTY	4 cut(s)	571, 780, 830, 886
Asp700I	GAANNNNTTC	4 cut(s)	531, 748, 780, 1535
AspS9I	GGNCC	1 cut(s)	816
AsuC2I	CCSGG	1 cut(s)	1224
AsuHPI	GGTGA	8 cut(s)	191, 263, 416, 662, 707, 728, 1035, 1388
AvaII	GGWCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	870
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	6 cut(s)	66, 234, 849, 935, 1337, 1490
Bbv12I	GWGCWC	2 cut(s)	870, 1080
BbvI	GCAGC	4 cut(s)	1180, 1271, 1328, 1433
BccI	CCATC	5 cut(s)	242, 641, 701, 1428, 1463
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	1224
BcoDI	GTCTC	2 cut(s)	386, 427
BfaI	CTAG	5 cut(s)	387, 413, 438, 584, 663
BfmI	CTRYAG	2 cut(s)	1447, 1548
BfuAI	ACCTGC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	4 cut(s)	1194, 1260, 1317, 1447
BlsI	GCNGC	4 cut(s)	1195, 1261, 1318, 1448
Bme1390I	CCNGG	2 cut(s)	21, 1224
Bme18I	GGWCC	1 cut(s)	816
BmgT120I	GGNCC	1 cut(s)	816
BmrFI	CCNGG	2 cut(s)	21, 1224
BmsI	GCATC	3 cut(s)	649, 895, 1463
BpiI	GAAGAC	6 cut(s)	66, 234, 849, 935, 1337, 1490
BpuMI	CCSGG	1 cut(s)	1224
Bsa29I	ATCGAT	1 cut(s)	1146
BsaBI	GATNNNNATC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	2 cut(s)	963, 1460
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	3 cut(s)	223, 1111, 1123
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	1146
BseGI	GGATG	6 cut(s)	172, 349, 772, 910, 1439, 1478
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	963, 1460
BseMI	GCAATG	3 cut(s)	223, 1111, 1123
BseMII	CTCAG	4 cut(s)	147, 717, 753, 936
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	4 cut(s)	1180, 1271, 1328, 1433
BshFI	GGCC	2 cut(s)	328, 638
BshVI	ATCGAT	1 cut(s)	1146
BsiHKAI	GWGCWC	2 cut(s)	870, 1080
BsiSI	CCGG	1 cut(s)	1224
BslI	CCNNNNNNNGG	2 cut(s)	963, 1460
BsmAI	GTCTC	2 cut(s)	386, 427
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	328, 638
Bso31I	GGTCTC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	870, 1080
Bsp143I	GATC	5 cut(s)	196, 253, 565, 580, 1288
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	2 cut(s)	328, 638
BspCNI	CTCAG	4 cut(s)	148, 718, 754, 935
BspDI	ATCGAT	1 cut(s)	1146
BspHI	TCATGA	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	1451
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	2 cut(s)	560, 1296
BspTNI	GGTCTC	1 cut(s)	427
BsrDI	GCAATG	3 cut(s)	223, 1111, 1123
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	5 cut(s)	196, 253, 565, 580, 1288
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	1282, 1489
BstAPI	GCANNNNNTGC	1 cut(s)	1268
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	4 cut(s)	156, 726, 762, 922
BstEII	GGTNACC	3 cut(s)	45, 650, 1226
BstF5I	GGATG	6 cut(s)	172, 349, 772, 910, 1439, 1478
BstKTI	GATC	5 cut(s)	199, 256, 568, 583, 1291
BstMAI	GTCTC	2 cut(s)	386, 427
BstMBI	GATC	5 cut(s)	196, 253, 565, 580, 1288
BstMWI	GCNNNNNNNGC	1 cut(s)	1268
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	2 cut(s)	459, 877
BstPI	GGTNACC	3 cut(s)	45, 650, 1226
BstSCI	CCNGG	2 cut(s)	19, 1222
BstSFI	CTRYAG	2 cut(s)	1447, 1548
BstV1I	GCAGC	4 cut(s)	1180, 1271, 1328, 1433
BstV2I	GAAGAC	6 cut(s)	66, 234, 849, 935, 1337, 1490
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	1146
BsuRI	GGCC	2 cut(s)	328, 638
BsuTUI	ATCGAT	1 cut(s)	1146
BtsCI	GGATG	6 cut(s)	172, 349, 772, 910, 1439, 1478
BtsIMutI	CAGTG	2 cut(s)	930, 1356
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	816
ClaI	ATCGAT	1 cut(s)	1146
Csp6I	GTAC	3 cut(s)	1278, 1490, 1543
CviQI	GTAC	3 cut(s)	1278, 1490, 1543
DdeI	CTNAG	4 cut(s)	156, 726, 762, 922
DpnI	GATC	5 cut(s)	198, 255, 567, 582, 1290
DpnII	GATC	5 cut(s)	196, 253, 565, 580, 1288
DraI	TTTAAA	1 cut(s)	952
Ecl136II	GAGCTC	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	870
Eco31I	GGTCTC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	2 cut(s)	540, 1332
Eco91I	GGTNACC	3 cut(s)	45, 650, 1226
EcoICRI	GAGCTC	1 cut(s)	868
EcoO65I	GGTNACC	3 cut(s)	45, 650, 1226
EcoRI	GAATTC	2 cut(s)	780, 830
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	870
FauI	CCCGC	1 cut(s)	685
FauNDI	CATATG	2 cut(s)	484, 1409
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	1194, 1260, 1317, 1447
FokI	GGATG	6 cut(s)	179, 356, 779, 917, 1446, 1485
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	4 cut(s)	1194, 1260, 1317, 1447
FspBI	CTAG	5 cut(s)	387, 413, 438, 584, 663
GluI	GCNGC	4 cut(s)	1194, 1260, 1317, 1447
HaeIII	GGCC	2 cut(s)	328, 638
HapII	CCGG	1 cut(s)	1224
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HinfI	GANTC	6 cut(s)	548, 722, 749, 853, 1148, 1307
HpaII	CCGG	1 cut(s)	1224
HphI	GGTGA	8 cut(s)	191, 263, 416, 662, 707, 728, 1035, 1388
Hpy166II	GTNNAC	2 cut(s)	1095, 1492
Hpy188I	TCNGA	6 cut(s)	105, 556, 570, 706, 727, 892
Hpy188III	TCNNGA	3 cut(s)	477, 536, 668
Hpy8I	GTNNAC	2 cut(s)	1095, 1492
HpyCH4III	ACNGT	2 cut(s)	1282, 1489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1268
HpyF3I	CTNAG	4 cut(s)	156, 726, 762, 922
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	196, 253, 565, 580, 1288
LmnI	GCTCC	2 cut(s)	1075, 1126
Lsp1109I	GCAGC	4 cut(s)	1180, 1271, 1328, 1433
LweI	GCATC	3 cut(s)	649, 895, 1463
MaeI	CTAG	5 cut(s)	387, 413, 438, 584, 663
MalI	GATC	5 cut(s)	198, 255, 567, 582, 1290
MboI	GATC	5 cut(s)	196, 253, 565, 580, 1288
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	870, 1080
MlyI	GAGTC	1 cut(s)	1316
MroXI	GAANNNNTTC	4 cut(s)	531, 748, 780, 1535
MseI	TTAA	3 cut(s)	633, 951, 1029
MslI	CAYNNNNRTG	4 cut(s)	1116, 1349, 1591, 1646
MspA1I	CMGCKG	1 cut(s)	1514
MspI	CCGG	1 cut(s)	1224
MspR9I	CCNGG	2 cut(s)	21, 1224
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	1268
NciI	CCSGG	1 cut(s)	1224
NdeI	CATATG	2 cut(s)	484, 1409
NdeII	GATC	5 cut(s)	196, 253, 565, 580, 1288
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	5 cut(s)	262, 593, 650, 695, 1658
NspI	RCATGY	2 cut(s)	459, 877
OliI	CACNNNNGTG	2 cut(s)	1349, 1646
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	4 cut(s)	531, 748, 780, 1535
PfeI	GAWTC	5 cut(s)	548, 722, 749, 853, 1148
PflMI	CCANNNNNTGG	1 cut(s)	1460
PkrI	GCNGC	4 cut(s)	1195, 1261, 1318, 1448
PleI	GAGTC	1 cut(s)	1315
PpsI	GAGTC	1 cut(s)	1315
PsiI	TTATAA	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	19
PspEI	GGTNACC	3 cut(s)	45, 650, 1226
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	1451
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	1514
RsaI	GTAC	3 cut(s)	1279, 1491, 1544
RsaNI	GTAC	3 cut(s)	1278, 1490, 1543
RseI	CAYNNNNRTG	4 cut(s)	1116, 1349, 1591, 1646
SacI	GAGCTC	1 cut(s)	870
SaqAI	TTAA	3 cut(s)	633, 951, 1029
SatI	GCNGC	4 cut(s)	1194, 1260, 1317, 1447
Sau3AI	GATC	5 cut(s)	196, 253, 565, 580, 1288
Sau96I	GGNCC	1 cut(s)	816
SchI	GAGTC	1 cut(s)	1316
ScrFI	CCNGG	2 cut(s)	21, 1224
SduI	GDGCHC	2 cut(s)	870, 1080
SfaNI	GCATC	3 cut(s)	649, 895, 1463
SfcI	CTRYAG	2 cut(s)	1447, 1548
SinI	GGWCC	1 cut(s)	816
SmiMI	CAYNNNNRTG	4 cut(s)	1116, 1349, 1591, 1646
SphI	GCATGC	1 cut(s)	459
SsiI	CCGC	1 cut(s)	692
SspMI	CTAG	5 cut(s)	387, 413, 438, 584, 663
SstI	GAGCTC	1 cut(s)	870
StyD4I	CCNGG	2 cut(s)	19, 1222
TaaI	ACNGT	2 cut(s)	1282, 1489
TaqI	TCGA	1 cut(s)	1146
TfiI	GAWTC	5 cut(s)	548, 722, 749, 853, 1148
Tru1I	TTAA	3 cut(s)	633, 951, 1029
Tru9I	TTAA	3 cut(s)	633, 951, 1029
TscAI	CASTG	2 cut(s)	930, 1356
TseFI	GTSAC	5 cut(s)	262, 593, 650, 695, 1658
TseI	GCWGC	4 cut(s)	1193, 1259, 1316, 1446
Tsp45I	GTSAC	5 cut(s)	262, 593, 650, 695, 1658
TspDTI	ATGAA	9 cut(s)	458, 479, 501, 693, 783, 863, 1144, 1439, 1528
TspRI	CASTG	2 cut(s)	930, 1356
Van91I	CCANNNNNTGG	1 cut(s)	1460
VpaK11BI	GGWCC	1 cut(s)	816
XapI	RAATTY	4 cut(s)	571, 780, 830, 886
XceI	RCATGY	2 cut(s)	459, 877
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 1014
XmnI	GAANNNNTTC	4 cut(s)	531, 748, 780, 1535
XspI	CTAG	5 cut(s)	387, 413, 438, 584, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.