Rh3BG314600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004256
Physical Location & Seq
Forward (+)
32020599 .. 32032198
11600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG314600.1

Sequence Viewer

Length: 504 bp
ATGTCTTCCCCAATCGAACAAGATCTTGGGTATAGAGACCCACCATTAACATATTGGTTTAAGGTTCCTGGAAGCAGAGATGGAGAGGGTTTCTTAGCCATCAAGGGTGACAAAGATGTAACAGACATGCTTGCTTTTCTACAAAATACAAATATACTTCAATTGTATGTTGTTTCTGGAGGTGTTAGAAGAAAAGAACAAGCAGAGTATGAATGGAAAAACGGGATAGCTCCTCCAAATGTGGACCATGAAAAGTATATTGACAATGTCATTGATGATTTAGAAGAAGTGGTCCAAGCAAGAGATGGCTCAGTTGAGGAGAATTTAATGCAAAATGTAGATAAGATTGTAAGTAAAAAGGGTGTTGCTGCTGTGCATTTATTTGAGGCAAACAAAACTTCCAAAGATAAGGGAAAAAGAAAAGTCTCACAAAGCACCAAGAAGAGAAAAAGTGGTAAGGCCAAAGCATTGGTAAATGCATTTGCATATGCTGCAGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.61

Weight (kDa)

7.82

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 322
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 30, 430
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 368, 491
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 244, 292
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 244, 292
BbvI GCAGC 2 cut(s) 355, 478
BccI CCATC 3 cut(s) 74, 107, 299
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 30, 430
BfmI CTRYAG 1 cut(s) 492
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 369, 492
BlsI GCNGC 2 cut(s) 370, 493
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 2 cut(s) 244, 292
BmgT120I GGNCC 2 cut(s) 244, 292
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 222, 332
BseXI GCAGC 2 cut(s) 355, 478
BshFI GGCC 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 30, 430
BsnI GGCC 1 cut(s) 461
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 30
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 94, 310
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 30, 430
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 355, 478
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 244, 292
CviAII CATG 2 cut(s) 127, 248
CviJI RGCY 4 cut(s) 98, 230, 309, 461
CviKI_1 RGCY 4 cut(s) 98, 230, 309, 461
DdeI CTNAG 2 cut(s) 94, 310
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 244, 292
EcoRII CCWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 2 cut(s) 130, 251
FatI CATG 2 cut(s) 126, 247
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 369, 492
Fsp4HI GCNGC 2 cut(s) 369, 492
GluI GCNGC 2 cut(s) 369, 492
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 461
Hin1II CATG 2 cut(s) 130, 251
HinfI GANTC 1 cut(s) 497
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 177, 501
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 5 cut(s) 331, 376, 479, 485, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 94, 310
Hsp92II CATG 2 cut(s) 130, 251
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 54, 81, 162
Lsp1109I GCAGC 2 cut(s) 355, 478
MaeIII GTNAC 2 cut(s) 107, 118
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 201, 296, 454
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 22
MluCI AATT 2 cut(s) 161, 322
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 5 cut(s) 79, 173, 243, 310, 379
Mph1103I ATGCAT 1 cut(s) 481
MseI TTAA 3 cut(s) 47, 60, 326
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeI CATATG 1 cut(s) 487
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 130, 251
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 130
PflFI GACNNNGTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 370, 493
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 244, 292
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 266
SaqAI TTAA 3 cut(s) 47, 60, 326
SatI GCNGC 2 cut(s) 369, 492
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 244, 292
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 66, 184, 232
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 244, 292
Sse9I AATT 2 cut(s) 161, 322
StyD4I CCNGG 1 cut(s) 67
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 161, 322
Tru1I TTAA 3 cut(s) 47, 60, 326
Tru9I TTAA 3 cut(s) 47, 60, 326
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 368, 491
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 225, 264
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 244, 292
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 2 cut(s) 51, 302
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.