Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Forward (+)

57887092 .. 57891227

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATGACTTAATGATGCTGGATAGATGGAGATATTTTCGTACTGGTGGAGAGCCACCCATCTACAAAGATGATTTGTTCTCATTGGAGATACACCATGGTGGGAGGTTCTACAGATTGGGCAGTGGTAGTAGACAATATAGAGGAGGTGAAGTAGCATGGTTTGATAATGACCACAACCAAGTTGTTACAGATATATATATAGTAGGTGGAGGTGTTAGAAGAAAAAAGGAAGCAGAGTTAGAGGATGAGACTGGAGAGGGTCCGAAACTAGTTGACCATAAAAAGTACTTGAATAATGTAGTTGAAGATTTAATGGATGTCCAAGAAGTTAATGAGTCTCATGTTGATTTAGATGGTAAAGCTGACAAGGCAGGGAGCTCATATGGGATGAACTTGGGCAACATTGATGATGGGACAATGAATTGTGATCTACCTATTATGCATTTAAGTGACAGAAATAAGGCAGACAAAAATAAGGGAAAAGTGAAGAAGTTGGGTAGGCCAAAAGTCAAGTTTGGTGGGCAGGGGATTAGAAATGGGTTTGCCATAGTAAAAGCAAGTGAACCATTGCAGTTCGAAGGTGATGCATTTGGTGAAGGCATTCAAATTTTAGCATTAAAAAAAAAAAAAAAAGTTGAAGCTCAAAATGTTAACCAAGTTGATAATTCTGATAATGTTCTAAATTCTGCAAATCATGTGGCAAACGAGAATGGCATGCCAAATGAAAATGTTGATGTAAACCATCAAACACCCACACAACAATCTGAACCAGTTTATGTCCAAAGTGTGGCTTCATCTCAACCAGTGCATTTATTAGAACCAAGTTTGCAATCTTTCCTTGCTCCAACCAGTTCTTCACAACCTATTGTATCATCAATGCCATCATTCTCAAACATGTTCAATGATTCACTAACAGTGAGGTCCAAGTCATATGCAAGGAAGCCACCTATAAGGTCTGACTCTATTAAAGGACCAAAAGATGCCAACAAGAAGGTTTGGAGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

337

Amino Acids

37.37

Weight (kDa)

6.52

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccI	GTMKAC	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	609, 685
AfaI	GTAC	2 cut(s)	43, 290
AfiI	CCNNNNNNNGG	1 cut(s)	790
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	5 cut(s)	295, 308, 608, 641, 904
AhlI	ACTAGT	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	841, 873
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	365, 381, 644
AluI	AGCT	3 cut(s)	365, 381, 644
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	2 cut(s)	245, 345
AoxI	GGCC	2 cut(s)	503, 1004
ApoI	RAATTY	2 cut(s)	609, 685
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	3 cut(s)	263, 924, 974
AsuHPI	GGTGA	3 cut(s)	161, 596, 608
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	3 cut(s)	263, 924, 974
BanII	GRGCYC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	383
BccI	CCATC	6 cut(s)	21, 68, 350, 407, 753, 892
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BcoDI	GTCTC	2 cut(s)	245, 345
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	112
BmcAI	AGTACT	1 cut(s)	290
Bme18I	GGWCC	3 cut(s)	263, 924, 974
BmgT120I	GGNCC	3 cut(s)	263, 924, 974
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	3 cut(s)	6, 577, 973
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	5 cut(s)	49, 259, 773, 806, 852
Bse3DI	GCAATG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	4 cut(s)	10, 253, 325, 396
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMI	GCAATG	1 cut(s)	569
BseNI	ACTGG	5 cut(s)	49, 259, 773, 806, 852
BseRI	GAGGAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	505, 1006
BsiHKAI	GWGCWC	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmAI	GTCTC	2 cut(s)	245, 345
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	505, 1006
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	2 cut(s)	505, 1006
BspLI	GGNNCC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	5 cut(s)	49, 259, 773, 806, 852
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	919
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	719
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	4 cut(s)	10, 253, 325, 396
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	2 cut(s)	245, 345
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	721, 901
BstSFI	CTRYAG	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	505, 1006
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	10, 253, 325, 396
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	130, 813, 924
Cac8I	GCNNGC	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	263, 924, 974
Csp6I	GTAC	2 cut(s)	42, 289
CspCI	CAANNNNNGTGG	4 cut(s)	502, 537, 681, 716
CviAII	CATG	6 cut(s)	98, 159, 344, 698, 718, 898
CviJI	RGCY	8 cut(s)	55, 365, 381, 505, 644, 794, 946, 1006
CviKI_1	RGCY	8 cut(s)	55, 365, 381, 505, 644, 794, 946, 1006
CviQI	GTAC	2 cut(s)	42, 289
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	3 cut(s)	263, 924, 974
Eco53kI	GAGCTC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	2 cut(s)	447, 592
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	6 cut(s)	101, 162, 347, 701, 721, 901
FalI	AAGNNNNNCTT	2 cut(s)	778, 810
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	6 cut(s)	97, 158, 343, 697, 717, 897
FauNDI	CATATG	2 cut(s)	385, 934
FblI	GTMKAC	1 cut(s)	133
FokI	GGATG	4 cut(s)	17, 260, 332, 403
FriOI	GRGCYC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	505, 1006
Hin1II	CATG	6 cut(s)	101, 162, 347, 701, 721, 901
HincII	GTYRAC	2 cut(s)	277, 655
HindII	GTYRAC	2 cut(s)	277, 655
HinfI	GANTC	3 cut(s)	338, 908, 962
HpaI	GTTAAC	1 cut(s)	655
HphI	GGTGA	3 cut(s)	161, 596, 608
Hpy166II	GTNNAC	5 cut(s)	134, 277, 566, 655, 742
Hpy188I	TCNGA	4 cut(s)	267, 673, 769, 961
Hpy8I	GTNNAC	5 cut(s)	134, 277, 566, 655, 742
HpyAV	CCTTC	3 cut(s)	575, 593, 988
HpyCH4III	ACNGT	1 cut(s)	919
HpyCH4V	TGCA	7 cut(s)	445, 574, 590, 692, 811, 832, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	101, 162, 347, 701, 721, 901
KspAI	GTTAAC	1 cut(s)	655
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	378, 850
LpnPI	CCDG	8 cut(s)	5, 30, 240, 360, 512, 786, 819, 865
LweI	GCATC	3 cut(s)	6, 577, 973
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	187, 452
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	4 cut(s)	234, 320, 502, 849
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	4 cut(s)	424, 609, 667, 685
MlyI	GAGTC	2 cut(s)	347, 956
MmeI	TCCRAC	1 cut(s)	872
MnlI	CCTC	8 cut(s)	99, 137, 140, 206, 238, 253, 915, 996
Mph1103I	ATGCAT	2 cut(s)	447, 592
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	7 cut(s)	11, 314, 333, 449, 620, 654, 969
MslI	CAYNNNNRTG	2 cut(s)	99, 450
Mva1269I	GAATGC	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	2 cut(s)	385, 934
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	6 cut(s)	101, 162, 347, 701, 721, 901
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	2 cut(s)	447, 592
NspI	RCATGY	2 cut(s)	721, 901
NspV	TTCGAA	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	1006
PciI	ACATGT	1 cut(s)	897
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	908
PflMI	CCANNNNNTGG	1 cut(s)	790
PleI	GAGTC	2 cut(s)	346, 956
PpsI	GAGTC	2 cut(s)	346, 956
PscI	ACATGT	1 cut(s)	897
Psp124BI	GAGCTC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	263, 924, 974
RsaI	GTAC	2 cut(s)	43, 290
RsaNI	GTAC	2 cut(s)	42, 289
RseI	CAYNNNNRTG	2 cut(s)	99, 450
SacI	GAGCTC	1 cut(s)	383
SaqAI	TTAA	7 cut(s)	11, 314, 333, 449, 620, 654, 969
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	3 cut(s)	263, 924, 974
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	2 cut(s)	347, 956
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	3 cut(s)	6, 577, 973
SfcI	CTRYAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	3 cut(s)	263, 924, 974
SmiMI	CAYNNNNRTG	2 cut(s)	99, 450
SpeI	ACTAGT	1 cut(s)	271
SphI	GCATGC	1 cut(s)	721
Sse9I	AATT	4 cut(s)	424, 609, 667, 685
SseBI	AGGCCT	1 cut(s)	1006
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	1006
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	919
TaqI	TCGA	1 cut(s)	579
TasI	AATT	4 cut(s)	424, 609, 667, 685
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	7 cut(s)	11, 314, 333, 449, 620, 654, 969
Tru9I	TTAA	7 cut(s)	11, 314, 333, 449, 620, 654, 969
TscAI	CASTG	3 cut(s)	130, 813, 924
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	407, 437, 741, 786
TspRI	CASTG	3 cut(s)	130, 813, 924
Van91I	CCANNNNNTGG	1 cut(s)	790
VpaK11BI	GGWCC	3 cut(s)	263, 924, 974
XapI	RAATTY	2 cut(s)	609, 685
XceI	RCATGY	2 cut(s)	721, 901
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	290
Zsp2I	ATGCAT	2 cut(s)	447, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.