Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Reverse (-)

61033834 .. 61042526

Gene Structure 8693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTATTGGTTTTTGTTACCTGGAAGTATTCGGGGAGAAGGTTGGTTACCAATATGTGAAGACAAAGATGTGTTAGATATGTTGAAGTTTATGCCAAGTAATCGGATATTGCAGATTTACATTGTTGGGGGAGGTGTAAGAAAAAAAAAGGAAGCTGAGTTAGAGGATGAGGGTGGGGGTTCTCCTAAAGAAGTTGATCACCAAAAGTATATTGGCAATGTGGTAGAAGACTTGGAAGAAGTGATTGATGGTGATCTTGCTGTGACAACTTTACATGGGGCAAAGGTTTCAAGTAAGGCAAGTGGAAAGAGAAACAAGGGAGGTAGGCCAAAGAATAAGAAGGATGTGGTTACACACTTGACAAACCAGTTTATAAATGTCAAGGCTAGTGAGACAATTGCAGGTGATAATCTAGTGGCTGAAAATAGAAAGAGACCTAGAATGAAGCAAAAAGCATGCAAGATGAAGAAGAAATCGAGACCATATGAAACCAGATTTATGGGGGAAAAAAGTTTTGTCGAAGTAGAAGGCATTCAAGAAGAACTCGAAACATCCGATAATGATGATCCAAATTTTGAAGATCTAGTAGATAGTGACTACGACCTTGATGATAATGATGATGAGTTTCTGTTTAAGGCCAATATCGATGGTGACCCCGATGCTAGTCATGAGTTCAATGAAATGGGATTTGCGGGTGACATTTCGGATGGAGAAGGTGAAGATTCCGAGAAGTTTGATAGTGGAACCGATTCAACAAAGAATCGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.62

Weight (kDa)

4.72

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	1 cut(s)	571
AgsI	TTSAA	6 cut(s)	85, 291, 536, 578, 676, 753
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	386, 427, 472
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	2 cut(s)	326, 636
ApoI	RAATTY	1 cut(s)	571
Asp700I	GAANNNNTTC	2 cut(s)	531, 748
AsuHPI	GGTGA	6 cut(s)	191, 263, 416, 662, 707, 728
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	2 cut(s)	66, 234
BccI	CCATC	3 cut(s)	242, 641, 701
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	386, 427, 472
BfaI	CTAG	5 cut(s)	387, 413, 438, 584, 663
BfuAI	ACCTGC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	2 cut(s)	66, 234
Bsa29I	ATCGAT	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	427, 472
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	645
BseGI	GGATG	4 cut(s)	172, 349, 551, 712
BseJI	GATNNNNATC	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	328, 638
BshVI	ATCGAT	1 cut(s)	645
BsmAI	GTCTC	3 cut(s)	386, 427, 472
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	328, 638
Bso31I	GGTCTC	2 cut(s)	427, 472
Bsp143I	GATC	4 cut(s)	196, 253, 565, 580
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	2 cut(s)	328, 638
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	560
BspTNI	GGTCTC	2 cut(s)	427, 472
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	196, 253, 565, 580
Bst2UI	CCWGG	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	156
BstEII	GGTNACC	2 cut(s)	45, 650
BstF5I	GGATG	4 cut(s)	172, 349, 551, 712
BstKTI	GATC	4 cut(s)	199, 256, 568, 583
BstMAI	GTCTC	3 cut(s)	386, 427, 472
BstMBI	GATC	4 cut(s)	196, 253, 565, 580
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	459
BstPI	GGTNACC	2 cut(s)	45, 650
BstSCI	CCNGG	1 cut(s)	19
BstV2I	GAAGAC	2 cut(s)	66, 234
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	328, 638
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	4 cut(s)	172, 349, 551, 712
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	667
ClaI	ATCGAT	1 cut(s)	645
CviAII	CATG	3 cut(s)	275, 456, 668
CviJI	RGCY	5 cut(s)	155, 328, 386, 419, 638
CviKI_1	RGCY	5 cut(s)	155, 328, 386, 419, 638
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	198, 255, 567, 582
DpnII	GATC	4 cut(s)	196, 253, 565, 580
Eco31I	GGTCTC	2 cut(s)	427, 472
Eco91I	GGTNACC	2 cut(s)	45, 650
EcoO65I	GGTNACC	2 cut(s)	45, 650
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	3 cut(s)	278, 459, 671
FatI	CATG	3 cut(s)	274, 455, 667
FauI	CCCGC	1 cut(s)	685
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	4 cut(s)	179, 356, 538, 719
FspBI	CTAG	5 cut(s)	387, 413, 438, 584, 663
HaeIII	GGCC	2 cut(s)	328, 638
Hin1II	CATG	3 cut(s)	278, 459, 671
HinfI	GANTC	3 cut(s)	722, 749, 760
HphI	GGTGA	6 cut(s)	191, 263, 416, 662, 707, 728
Hpy188I	TCNGA	4 cut(s)	105, 556, 706, 727
Hpy188III	TCNNGA	3 cut(s)	477, 536, 668
HpyAV	CCTTC	4 cut(s)	32, 334, 521, 707
HpyCH4V	TGCA	3 cut(s)	112, 401, 459
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	278, 459, 671
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	196, 253, 565, 580
LpnPI	CCDG	5 cut(s)	6, 33, 380, 387, 505
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	5 cut(s)	387, 413, 438, 584, 663
MaeIII	GTNAC	7 cut(s)	15, 45, 262, 349, 593, 650, 695
MalI	GATC	4 cut(s)	198, 255, 567, 582
MboI	GATC	4 cut(s)	196, 253, 565, 580
MboII	GAAGA	8 cut(s)	71, 239, 248, 478, 481, 551, 590, 731
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	2 cut(s)	396, 571
MnlI	CCTC	5 cut(s)	125, 157, 163, 314, 758
MroXI	GAANNNNTTC	2 cut(s)	531, 748
MseI	TTAA	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	4 cut(s)	196, 253, 565, 580
NlaIII	CATG	3 cut(s)	278, 459, 671
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	4 cut(s)	262, 593, 650, 695
NspI	RCATGY	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	2 cut(s)	531, 748
PfeI	GAWTC	3 cut(s)	722, 749, 760
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	19
PspEI	GGTNACC	2 cut(s)	45, 650
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	580
SaqAI	TTAA	1 cut(s)	633
Sau3AI	GATC	4 cut(s)	196, 253, 565, 580
ScrFI	CCNGG	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	649
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	2 cut(s)	396, 571
SsiI	CCGC	1 cut(s)	692
SspMI	CTAG	5 cut(s)	387, 413, 438, 584, 663
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	5 cut(s)	476, 519, 546, 645, 763
TasI	AATT	2 cut(s)	396, 571
TfiI	GAWTC	3 cut(s)	722, 749, 760
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseFI	GTSAC	4 cut(s)	262, 593, 650, 695
Tsp45I	GTSAC	4 cut(s)	262, 593, 650, 695
TspDTI	ATGAA	4 cut(s)	458, 479, 501, 693
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmnI	GAANNNNTTC	2 cut(s)	531, 748
XspI	CTAG	5 cut(s)	387, 413, 438, 584, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.