No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261 |
| rosa_laevigata | RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953 |
| rosa_multiflora | Rmu_sc0007235.1_g000002 |
| rosa_roxburghii | Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440 |
| rosa_samantha | Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300 |
| rosa_wichuraiana | Rw4G012260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 413, 421 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AcsI | RAATTY | 3 cut(s) | 4, 219, 298 |
| AgsI | TTSAA | 2 cut(s) | 218, 254 |
| AluBI | AGCT | 1 cut(s) | 257 |
| AluI | AGCT | 1 cut(s) | 257 |
| AoxI | GGCC | 1 cut(s) | 113 |
| ApoI | RAATTY | 3 cut(s) | 4, 219, 298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 2 cut(s) | 206, 218 |
| AsuII | TTCGAA | 1 cut(s) | 189 |
| BccI | CCATC | 1 cut(s) | 17 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BmsI | GCATC | 4 cut(s) | 187, 209, 346, 354 |
| Bpu14I | TTCGAA | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 1 cut(s) | 384 |
| Bse3DI | GCAATG | 1 cut(s) | 179 |
| BseDI | CCNNGG | 1 cut(s) | 384 |
| BseMI | GCAATG | 1 cut(s) | 179 |
| BshFI | GGCC | 1 cut(s) | 115 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| BsmI | GAATGC | 1 cut(s) | 213 |
| BsnI | GGCC | 1 cut(s) | 115 |
| Bsp119I | TTCGAA | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspANI | GGCC | 1 cut(s) | 115 |
| BspT104I | TTCGAA | 1 cut(s) | 189 |
| BsrDI | GCAATG | 1 cut(s) | 179 |
| BssECI | CCNNGG | 1 cut(s) | 384 |
| BssMI | GATC | 1 cut(s) | 40 |
| Bst4CI | ACNGT | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 395 |
| BstBI | TTCGAA | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDSI | CCRYGG | 1 cut(s) | 384 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 395 |
| BstNSI | RCATGY | 1 cut(s) | 334 |
| BsuRI | GGCC | 1 cut(s) | 115 |
| BtgI | CCRYGG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 112, 147, 294, 329 |
| CviAII | CATG | 2 cut(s) | 311, 331 |
| CviJI | RGCY | 2 cut(s) | 115, 257 |
| CviKI_1 | RGCY | 2 cut(s) | 115, 257 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| EcoT22I | ATGCAT | 2 cut(s) | 57, 202 |
| FaeI | CATG | 2 cut(s) | 314, 334 |
| FaiI | YATR | 9 cut(s) | 53, 161, 312, 332, 337, 339, 362, 413, 421 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 2 cut(s) | 310, 330 |
| FauNDI | CATATG | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| HaeIII | GGCC | 1 cut(s) | 115 |
| Hin1II | CATG | 2 cut(s) | 314, 334 |
| HincII | GTYRAC | 1 cut(s) | 268 |
| HindII | GTYRAC | 1 cut(s) | 268 |
| HpaI | GTTAAC | 1 cut(s) | 268 |
| HphI | GGTGA | 2 cut(s) | 206, 218 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 176, 268 |
| Hpy188I | TCNGA | 1 cut(s) | 286 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 176, 268 |
| HpyAV | CCTTC | 3 cut(s) | 185, 203, 241 |
| HpyCH4III | ACNGT | 1 cut(s) | 31 |
| HpyCH4V | TGCA | 6 cut(s) | 55, 184, 200, 305, 367, 398 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 395 |
| Hsp92II | CATG | 2 cut(s) | 314, 334 |
| KspAI | GTTAAC | 1 cut(s) | 268 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LpnPI | CCDG | 2 cut(s) | 189, 353 |
| LweI | GCATC | 4 cut(s) | 187, 209, 346, 354 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MluCI | AATT | 6 cut(s) | 4, 34, 219, 280, 298, 414 |
| MnlI | CCTC | 1 cut(s) | 364 |
| Mph1103I | ATGCAT | 2 cut(s) | 57, 202 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MseI | TTAA | 3 cut(s) | 59, 230, 267 |
| MslI | CAYNNNNRTG | 1 cut(s) | 60 |
| Mva1269I | GAATGC | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 395 |
| NdeI | CATATG | 1 cut(s) | 337 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIII | CATG | 2 cut(s) | 314, 334 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| NsiI | ATGCAT | 2 cut(s) | 57, 202 |
| NspI | RCATGY | 1 cut(s) | 334 |
| NspV | TTCGAA | 1 cut(s) | 189 |
| PaeI | GCATGC | 1 cut(s) | 334 |
| PctI | GAATGC | 1 cut(s) | 213 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PsiI | TTATAA | 2 cut(s) | 413, 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 60 |
| SaqAI | TTAA | 3 cut(s) | 59, 230, 267 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| SetI | ASST | 5 cut(s) | 49, 196, 252, 259, 375 |
| SfaNI | GCATC | 4 cut(s) | 187, 209, 346, 354 |
| SfuI | TTCGAA | 1 cut(s) | 189 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 60 |
| SphI | GCATGC | 1 cut(s) | 334 |
| Sse9I | AATT | 6 cut(s) | 4, 34, 219, 280, 298, 414 |
| TaaI | ACNGT | 1 cut(s) | 31 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TasI | AATT | 6 cut(s) | 4, 34, 219, 280, 298, 414 |
| Tru1I | TTAA | 3 cut(s) | 59, 230, 267 |
| Tru9I | TTAA | 3 cut(s) | 59, 230, 267 |
| TscAI | CASTG | 1 cut(s) | 36 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 2 cut(s) | 17, 354 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| TspRI | CASTG | 1 cut(s) | 36 |
| XapI | RAATTY | 3 cut(s) | 4, 219, 298 |
| XceI | RCATGY | 1 cut(s) | 334 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| Zsp2I | ATGCAT | 2 cut(s) | 57, 202 |