RLG00000031953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004256
Physical Location & Seq
Reverse (-)
9787799 .. 9792306
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031953

Sequence Viewer

Length: 1305 bp
ATGGTGAACTTTTGGAGCTATTTCAGAATCGATGGAAAGACAGAACCAAATAACGGTGAATGGTTCACATTAGAGATTAATCATGGTGGAAGATTCTACAGAACTACAAGTGGTAGTCGATATTATAATGGAGGTGAGAAGTTGTTTGTTGATAAACTCGACCGAGACATAATTGCATGGACTTCTTTAAACTGGTTTGCTGAAGATCTTGGGTATAGAGACCCACCATTAACATATTGGTTTAAGGTTCCTGGAAGCAGAGATGGAGAGGGTTTCTTAGCCATCAAGGGTGACAAAGATGTAACAGACATGCTTGCATTTCTACAAAATACAAATATACTTCAATTGTATGTTGTTTCTAGAGGTGTTAGAAGAAAAGAACAAGCAGAGTATGAATGGAAAAATGGGATAGCTCCTCCAGATGTCGACCATGGAAAGTATATCGACAATGTCATTGATGATTTAGAAGAAGTGGTCCAAGTTAGAGATGGCTCAGTTGAGGAGAATTTAATGCAAAATGTAGATAAGATTGTAAGTACTAAGGGTGTTGCTGCTGTGCATTTATCTGATTTAAACAAAACTTCCAAAGATCAGGGAAAAACAAAAGTCTCACAAAGCACCAAGAAGAGAAAAAGTGGTAAGGCCAAAGCATTTGTAAAAGCATTTGCATATGTTGCAGACTCCAAAAATTTGGCTGAAGTTGGAAGTTCAAATACAAGTGCAGTGGAGAAGGAAATGGTGAAAAGGAAGGCCACTGGTAGGAAAAAAATGAGGGAAAGTAGATATGATACTCGTTTTAAAGGGGAGATGAGTTATGTTGATCAGGTACCATCTATGAATGCAAATAATGTTGACACAACTCCAAATGCTAGTTTTGTCAATGAGGTGCCAAGTGCGAGTGAAAACAATATTGACACAACTACAATTCTTGGTAATGTCAATCAGGTGCTATTTGAGAATTCAAACAATGTGACCATTGAATTAGGTGGGATACCACAAAATGATGGTTCTGCAATTGAGAAAGTACTTGGTGATAGAGTTGAAGGACAAACTTATACATCTTCTCTGCCAAATTCATCTACACAAGCTTTCTCTCAAACATTACCCAAGCCTCACTCAAGCTCACAATCTAAGGTCTCATCCCCAGCAAATTTCTCATCTGTTTACATTGATGGTAAAACAGGATTCCCAATGAGGTGGAAGTCAGCTGCAAAGAATGGCAAACCATTTAAAACACCAAGAGGCAATTGTGCAAAAGTGGGGATCCAAAAGGAACCAAAAGCAGGAACCAACAAGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

435

Amino Acids

48.19

Weight (kDa)

9.13

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 20 - 118 1.9e-14 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 826
AccB1I GGYRCC 2 cut(s) 826, 886
AccI GTMKAC 1 cut(s) 426
AclWI GGATC 2 cut(s) 1258, 1271
AcsI RAATTY 5 cut(s) 505, 688, 958, 1072, 1150
AcuI CTGAAG 2 cut(s) 222, 717
AfaI GTAC 3 cut(s) 538, 828, 1026
AfiI CCNNNNNNNGG 3 cut(s) 53, 759, 1283
AgsI TTSAA 5 cut(s) 344, 711, 963, 980, 1043
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 5 cut(s) 18, 413, 1088, 1122, 1208
AluI AGCT 5 cut(s) 18, 413, 1088, 1122, 1208
Alw26I GTCTC 4 cut(s) 159, 213, 613, 1141
AlwI GGATC 2 cut(s) 1258, 1271
AoxI GGCC 2 cut(s) 642, 750
ApeKI GCWGC 2 cut(s) 551, 1208
ApoI RAATTY 5 cut(s) 505, 688, 958, 1072, 1150
AseI ATTAAT 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 475
AsuHPI GGTGA 6 cut(s) 16, 68, 146, 302, 751, 1043
AvaII GGWCC 1 cut(s) 475
BamHI GGATCC 1 cut(s) 1263
BanI GGYRCC 2 cut(s) 826, 886
BarI GAAGNNNNNNTAC 2 cut(s) 697, 729
BbvI GCAGC 2 cut(s) 538, 1195
BccI CCATC 7 cut(s) 26, 257, 290, 482, 838, 998, 1166
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 984
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 4 cut(s) 159, 213, 613, 1141
BfaI CTAG 2 cut(s) 360, 870
BfmI CTRYAG 1 cut(s) 97
BfuI GTATCC 1 cut(s) 984
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 552, 1209
BlsI GCNGC 2 cut(s) 553, 1210
BmcAI AGTACT 2 cut(s) 538, 1026
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 6 cut(s) 249, 828, 888, 1265, 1275, 1288
BmrFI CCNGG 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 1102
Bsa29I ATCGAT 1 cut(s) 30
BsaI GGTCTC 2 cut(s) 213, 1141
BsaJI CCNNGG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 759, 1283
Bse1I ACTGG 2 cut(s) 197, 760
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 1139
BseLI CCNNNNNNNGG 3 cut(s) 53, 759, 1283
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 197, 760
BseRI GAGGAG 2 cut(s) 405, 515
BseXI GCAGC 2 cut(s) 538, 1195
BseYI CCCAGC 1 cut(s) 1144
BsgI GTGCAG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 644, 752
BshNI GGYRCC 2 cut(s) 826, 886
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 53, 759, 1283
BsmAI GTCTC 4 cut(s) 159, 213, 613, 1141
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 2 cut(s) 644, 752
Bso31I GGTCTC 2 cut(s) 213, 1141
Bsp143I GATC 4 cut(s) 205, 589, 820, 1263
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 2 cut(s) 644, 752
BspCNI CTCAG 1 cut(s) 506
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 6 cut(s) 249, 828, 888, 1265, 1275, 1288
BspPI GGATC 2 cut(s) 1258, 1271
BspT107I GGYRCC 2 cut(s) 826, 886
BspTNI GGTCTC 2 cut(s) 213, 1141
BsrI ACTGG 2 cut(s) 197, 760
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 4 cut(s) 205, 589, 820, 1263
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 4 cut(s) 277, 493, 540, 1131
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 1139
BstKTI GATC 4 cut(s) 208, 592, 823, 1266
BstMAI GTCTC 4 cut(s) 159, 213, 613, 1141
BstMBI GATC 4 cut(s) 205, 589, 820, 1263
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 538, 1195
BstX2I RGATCY 2 cut(s) 205, 1263
BstXI CCANNNNNNTGG 2 cut(s) 691, 1197
BstYI RGATCY 2 cut(s) 205, 1263
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 984
BsuRI GGCC 2 cut(s) 644, 752
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 1139
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 729, 753
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 3 cut(s) 537, 827, 1025
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 83, 177, 310, 431
CviQI GTAC 3 cut(s) 537, 827, 1025
DdeI CTNAG 4 cut(s) 277, 493, 540, 1131
DpnI GATC 4 cut(s) 207, 591, 822, 1265
DpnII GATC 4 cut(s) 205, 589, 820, 1263
DraI TTTAAA 4 cut(s) 189, 573, 799, 1231
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 2 cut(s) 213, 1141
Eco47I GGWCC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 222, 717
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 4 cut(s) 86, 180, 313, 434
FatI CATG 4 cut(s) 82, 176, 309, 430
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 552, 1209
FokI GGATG 1 cut(s) 1126
Fsp4HI GCNGC 2 cut(s) 552, 1209
FspBI CTAG 2 cut(s) 360, 870
GluI GCNGC 2 cut(s) 552, 1209
GsaI CCCAGC 1 cut(s) 1148
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 644, 752
Hin1II CATG 4 cut(s) 86, 180, 313, 434
HincII GTYRAC 2 cut(s) 427, 853
HindII GTYRAC 2 cut(s) 427, 853
HindIII AAGCTT 1 cut(s) 1086
HinfI GANTC 4 cut(s) 27, 93, 680, 1185
HphI GGTGA 6 cut(s) 16, 68, 146, 302, 751, 1043
Hpy166II GTNNAC 5 cut(s) 7, 66, 427, 853, 1165
Hpy188I TCNGA 2 cut(s) 26, 568
Hpy188III TCNNGA 2 cut(s) 360, 419
Hpy8I GTNNAC 5 cut(s) 7, 66, 427, 853, 1165
HpyAV CCTTC 3 cut(s) 724, 742, 1037
HpyCH4III ACNGT 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 4 cut(s) 277, 493, 540, 1131
Hsp92II CATG 4 cut(s) 86, 180, 313, 434
KpnI GGTACC 1 cut(s) 830
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 205, 589, 820, 1263
LmnI GCTCC 2 cut(s) 15, 418
Lsp1109I GCAGC 2 cut(s) 538, 1195
MaeI CTAG 2 cut(s) 360, 870
MaeIII GTNAC 3 cut(s) 290, 301, 970
MalI GATC 4 cut(s) 207, 591, 822, 1265
MboI GATC 4 cut(s) 205, 589, 820, 1263
MboII GAAGA 6 cut(s) 102, 215, 384, 479, 637, 1053
MfeI CAATTG 3 cut(s) 344, 1014, 1246
MflI RGATCY 2 cut(s) 205, 1263
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 682
MseI TTAA 8 cut(s) 78, 188, 230, 243, 509, 572, 798, 1230
MspA1I CMGCKG 1 cut(s) 1208
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 3 cut(s) 344, 1014, 1246
Mva1269I GAATGC 1 cut(s) 844
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 674
NcoI CCATGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 670
NdeII GATC 4 cut(s) 205, 589, 820, 1263
NlaIII CATG 4 cut(s) 86, 180, 313, 434
NlaIV GGNNCC 6 cut(s) 249, 828, 888, 1265, 1275, 1288
NmuCI GTSAC 2 cut(s) 290, 970
NspI RCATGY 1 cut(s) 313
PctI GAATGC 1 cut(s) 844
PfeI GAWTC 3 cut(s) 27, 93, 1185
PflFI GACNNNGTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 553, 1210
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 1144
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 6 cut(s) 249, 828, 888, 1265, 1275, 1288
PspPI GGNCC 1 cut(s) 475
PsuI RGATCY 2 cut(s) 205, 1263
PsyI GACNNNGTC 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 3 cut(s) 538, 828, 1026
RsaNI GTAC 3 cut(s) 537, 827, 1025
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 8 cut(s) 78, 188, 230, 243, 509, 572, 798, 1230
SatI GCNGC 2 cut(s) 552, 1209
Sau3AI GATC 4 cut(s) 205, 589, 820, 1263
Sau96I GGNCC 1 cut(s) 475
ScaI AGTACT 2 cut(s) 538, 1026
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
SspI AATATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 360, 870
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 5 cut(s) 30, 118, 159, 426, 444
TaqII GACCGA 1 cut(s) 177
TatI WGTACW 2 cut(s) 536, 1024
TfiI GAWTC 3 cut(s) 27, 93, 1185
Tru1I TTAA 8 cut(s) 78, 188, 230, 243, 509, 572, 798, 1230
Tru9I TTAA 8 cut(s) 78, 188, 230, 243, 509, 572, 798, 1230
TscAI CASTG 2 cut(s) 729, 760
TseFI GTSAC 2 cut(s) 290, 970
TseI GCWGC 2 cut(s) 551, 1208
Tsp45I GTSAC 2 cut(s) 290, 970
TspDTI ATGAA 3 cut(s) 408, 851, 1065
TspRI CASTG 2 cut(s) 729, 760
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 475
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 5 cut(s) 505, 688, 958, 1072, 1150
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 2 cut(s) 234, 485
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 2 cut(s) 360, 870
ZrmI AGTACT 2 cut(s) 538, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.