Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Reverse (-)

46817939 .. 46819948

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG372300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCCAGGAAGTAGAGATGGGGAGGAATTGTTGGAATTACATAATGATAGAGATATTGCTAACATGGTTGCATTTAGGACCACAACCAAGTTGTTACAGATATACATAGTAGGTGGAGGTGTTAGAAGAAAAAAGGAAGCAGAGTTAGGGGATGAGACTGGAGAGGGTCCGAAACTAGTTGACCATAAAAAGTACTTGAATAATGTAGTTGAAGATTTAATGGATGTCCAAGAAGTTAATGAGTCTCATGTTGATTTAGATGGTAAAGCTGACAAGGCAGGGAGCTCATATGGGATGAATTTGGGCAACATTGATGATGGGATAGTGAATTGTGATCTACCTATTATGCAATTAAGTGACAGAAATAAGGCAGACAAAAATAAGGGAAAAGTGAAGAAGTTGGGTAGGCCAAAAGTCAAGTTTGGTGGGCAGGGGATTAGAAATGGGTTTGCCATAGTAAAGGCAAGTGAACCATTGCAGTTCGAAGGTGATGCATCTGGTGAAGGCATTCAAATTTTAGCATTAAAAAAAAAAGGTAAGAAGGTTGAAGCTCAAAATGTTAACCAAGTTGATAATTCTGATAATGTTCTAAATTCTGCAAATCATGTGGCAAACGAGAATGGCATGCCAAATGAAAATACTGATGTTGATACTATGATGCAGGAGATACCTGCCTTCTCTGGAGCATACACGTCTGCTCAGGTGAAGGATGTTTTCGAGACTGAGATGGATCATGCTAATAACTCTGTCATAGATGCAACAAGTACCACCATATTTGAAGAAGCAAGAGTATGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.01

Weight (kDa)

4.96

Isoelectric Point (pI)

21.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AclWI	GGATC	1 cut(s)	738
AcsI	RAATTY	3 cut(s)	298, 513, 592
AfaI	GTAC	2 cut(s)	194, 766
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	5 cut(s)	199, 212, 512, 548, 779
AhlI	ACTAGT	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	693
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	269, 285, 551
AluI	AGCT	3 cut(s)	269, 285, 551
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	3 cut(s)	149, 249, 713
AlwI	GGATC	1 cut(s)	738
AoxI	GGCC	1 cut(s)	407
ApoI	RAATTY	3 cut(s)	298, 513, 592
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	78, 167
AsuHPI	GGTGA	3 cut(s)	500, 512, 715
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	78, 167
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	287
BccI	CCATC	4 cut(s)	11, 254, 311, 721
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	3 cut(s)	149, 249, 713
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	679
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	78, 167
BmgBI	CACGTC	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	78, 167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	4 cut(s)	481, 503, 648, 745
BpmI	CTGGAG	2 cut(s)	180, 702
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	4 cut(s)	157, 229, 300, 715
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	713, 714
BseNI	ACTGG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	287
BsmAI	GTCTC	3 cut(s)	149, 249, 713
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	334, 730
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	712, 715
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	334, 730
Bst2UI	CCWGG	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	699, 723
BstF5I	GGATG	4 cut(s)	157, 229, 300, 715
BstKTI	GATC	2 cut(s)	337, 733
BstMAI	GTCTC	3 cut(s)	149, 249, 713
BstMBI	GATC	2 cut(s)	334, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	157, 229, 300, 715
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	626
Cfr13I	GGNCC	2 cut(s)	78, 167
Csp6I	GTAC	2 cut(s)	193, 765
CspCI	CAANNNNNGTGG	6 cut(s)	406, 441, 588, 623, 757, 792
CviAII	CATG	5 cut(s)	64, 248, 605, 625, 734
CviJI	RGCY	4 cut(s)	269, 285, 409, 551
CviKI_1	RGCY	4 cut(s)	269, 285, 409, 551
CviQI	GTAC	2 cut(s)	193, 765
DdeI	CTNAG	2 cut(s)	699, 723
DpnI	GATC	2 cut(s)	336, 732
DpnII	GATC	2 cut(s)	334, 730
Ecl136II	GAGCTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	78, 167
Eco53kI	GAGCTC	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	5 cut(s)	67, 251, 608, 628, 737
FatI	CATG	5 cut(s)	63, 247, 604, 624, 733
FauNDI	CATATG	1 cut(s)	289
FokI	GGATG	4 cut(s)	164, 236, 307, 722
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	180, 702
HaeIII	GGCC	1 cut(s)	409
Hin1II	CATG	5 cut(s)	67, 251, 608, 628, 737
HincII	GTYRAC	2 cut(s)	181, 562
HindII	GTYRAC	2 cut(s)	181, 562
HinfI	GANTC	1 cut(s)	242
HpaI	GTTAAC	1 cut(s)	562
HphI	GGTGA	3 cut(s)	500, 512, 715
Hpy166II	GTNNAC	3 cut(s)	181, 470, 562
Hpy188I	TCNGA	2 cut(s)	171, 580
Hpy188III	TCNNGA	2 cut(s)	681, 718
Hpy8I	GTNNAC	3 cut(s)	181, 470, 562
HpyAV	CCTTC	5 cut(s)	479, 497, 535, 685, 700
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	71, 349, 478, 494, 599, 661, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	699, 723
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	5 cut(s)	67, 251, 608, 628, 737
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	334, 730
LmnI	GCTCC	2 cut(s)	282, 683
LpnPI	CCDG	9 cut(s)	18, 144, 264, 416, 483, 647, 666, 684, 686
LweI	GCATC	4 cut(s)	481, 503, 648, 745
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	2 cut(s)	93, 356
MalI	GATC	2 cut(s)	336, 732
MboI	GATC	2 cut(s)	334, 730
MboII	GAAGA	4 cut(s)	138, 224, 406, 791
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	8 cut(s)	26, 35, 298, 328, 350, 513, 574, 592
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	3 cut(s)	16, 110, 157
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	5 cut(s)	218, 237, 353, 524, 561
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	334, 730
NlaIII	CATG	5 cut(s)	67, 251, 608, 628, 737
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	356
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	507
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	78, 167
RsaI	GTAC	2 cut(s)	194, 766
RsaNI	GTAC	2 cut(s)	193, 765
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	218, 237, 353, 524, 561
Sau3AI	GATC	2 cut(s)	334, 730
Sau96I	GGNCC	2 cut(s)	78, 167
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	4 cut(s)	481, 503, 648, 745
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	2 cut(s)	78, 167
SpeI	ACTAGT	1 cut(s)	175
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	8 cut(s)	26, 35, 298, 328, 350, 513, 574, 592
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	4
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	2 cut(s)	483, 717
TasI	AATT	8 cut(s)	26, 35, 298, 328, 350, 513, 574, 592
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	5 cut(s)	218, 237, 353, 524, 561
Tru9I	TTAA	5 cut(s)	218, 237, 353, 524, 561
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	311, 648
VpaK11BI	GGWCC	2 cut(s)	78, 167
XapI	RAATTY	3 cut(s)	298, 513, 592
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.