Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007235.1

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Forward (+)

10577 .. 14584

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007235.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgtactggtttctgttacctggaagtattcaaggagaaggttggttaccaatatgcgaagacaaggatgtgttagatatgttaaagttcatgccaagtaatagaatattgcagatttacattgttggaggaggtgtaagaaaaaaaagggaaactgagctagaggatgagggcatgggttgtcctaaagaggttgatcaccagaagtatattggcaacatggtagaagacctagaagaagtgattgatgatggtcctaatgtgacaagcaattattgtgcaaagatttcaaatggggcagaggtttcaagagaggcaaatggaaaacgaaacaagggaggtaggcctaagaataagaaggatgtggttactcagttgacaaaccagtttataaatgttaaggctagtgagacaattgcagatgataatgtggagttaatagtttgccaattaggagttaatagtttgcatgatgttgatctccaagccagggcatgtacctgcaggaggtgggaacttagtggacttccatgtccacctgcagttgttgcaatattttctaagggatatagaccagatgactttgtggatgaggctttttcactgaagaaatacatgcttgcatatgaaccagcaataaaccttatccctggtgttgatgaatgggaggttgttgagaagcccattttacctctgaggtacactagaggacctggaaggcctaagttatcaagaaacaaggaactagggaacccgagccgaaaacagagcacgttttcgctggggttgttctcactcctccggccacctcaagaccccagactactgcccactcctttgcctcgaccttgcgcagctgccagtggcacccttgcgccgcctcgtggcctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

297

Amino Acids

33.03

Weight (kDa)

6.76

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AarI	CACCTGC	1 cut(s)	547
AasI	GACNNNNNNGTC	1 cut(s)	531
Acc16I	TGCGCA	1 cut(s)	853
Acc36I	ACCTGC	2 cut(s)	509, 547
AccB1I	GGYRCC	1 cut(s)	866
AciI	CCGC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	5, 499, 701
AfiI	CCNNNNNNNGG	3 cut(s)	490, 507, 884
AgsI	TTSAA	3 cut(s)	32, 291, 309
AjnI	CCWGG	4 cut(s)	19, 488, 649, 712
AluBI	AGCT	2 cut(s)	160, 857
AluI	AGCT	2 cut(s)	160, 857
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	754
AoxI	GGCC	4 cut(s)	344, 719, 803, 886
ApeKI	GCWGC	2 cut(s)	854, 857
AspLEI	GCGC	2 cut(s)	854, 877
AspS9I	GGNCC	2 cut(s)	254, 710
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	754
AvaII	GGWCC	2 cut(s)	254, 710
BanI	GGYRCC	1 cut(s)	866
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	882
BbsI	GAAGAC	2 cut(s)	66, 234
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	2 cut(s)	844, 866
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	4 cut(s)	21, 490, 651, 714
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	5 cut(s)	161, 233, 405, 705, 746
BfmI	CTRYAG	3 cut(s)	502, 540, 890
BfuAI	ACCTGC	2 cut(s)	509, 547
BisI	GCNGC	3 cut(s)	855, 858, 878
BlsI	GCNGC	3 cut(s)	856, 859, 879
Bme1390I	CCNGG	4 cut(s)	21, 490, 651, 714
Bme18I	GGWCC	2 cut(s)	254, 710
BmeT110I	CYCGRG	1 cut(s)	754
BmgT120I	GGNCC	2 cut(s)	254, 710
BmiI	GGNNCC	2 cut(s)	752, 868
BmrFI	CCNGG	4 cut(s)	21, 490, 651, 714
BpiI	GAAGAC	2 cut(s)	66, 234
BpuEI	CTTGAG	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	489, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 507, 884
Bse1I	ACTGG	3 cut(s)	11, 385, 861
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	4 cut(s)	21, 490, 651, 714
BseDI	CCNNGG	2 cut(s)	489, 649
BseGI	GGATG	4 cut(s)	73, 172, 367, 595
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	490, 507, 884
BseMII	CTCAG	3 cut(s)	147, 386, 686
BseNI	ACTGG	3 cut(s)	11, 385, 861
BseRI	GAGGAG	2 cut(s)	144, 788
BseXI	GCAGC	2 cut(s)	844, 866
BseYI	CCCAGC	1 cut(s)	781
BshFI	GGCC	4 cut(s)	346, 721, 805, 888
BshNI	GGYRCC	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	754
BsiSI	CCGG	1 cut(s)	802
BslI	CCNNNNNNNGG	3 cut(s)	490, 507, 884
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	4 cut(s)	346, 721, 805, 888
BsoBI	CYCGRG	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp143I	GATC	2 cut(s)	196, 478
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	4 cut(s)	346, 721, 805, 888
BspCNI	CTCAG	3 cut(s)	148, 385, 687
BspLI	GGNNCC	2 cut(s)	752, 868
BspMAI	CTGCAG	2 cut(s)	506, 544
BspMI	ACCTGC	2 cut(s)	509, 547
BspT107I	GGYRCC	1 cut(s)	866
BsrI	ACTGG	3 cut(s)	11, 385, 861
BssECI	CCNNGG	2 cut(s)	489, 649
BssMI	GATC	2 cut(s)	196, 478
BssSI	CACGAG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	4 cut(s)	21, 490, 651, 714
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	7 cut(s)	156, 348, 372, 518, 561, 695, 723
BstEII	GGTNACC	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	4 cut(s)	73, 172, 367, 595
BstHHI	GCGC	2 cut(s)	854, 877
BstKTI	GATC	2 cut(s)	199, 481
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	196, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	4 cut(s)	21, 490, 651, 714
BstNSI	RCATGY	2 cut(s)	498, 619
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	4 cut(s)	19, 488, 649, 712
BstSFI	CTRYAG	3 cut(s)	502, 540, 890
BstV1I	GCAGC	2 cut(s)	844, 866
BstV2I	GAAGAC	2 cut(s)	66, 234
BsuRI	GGCC	4 cut(s)	346, 721, 805, 888
BtsCI	GGATG	4 cut(s)	73, 172, 367, 595
BtsIMutI	CAGTG	2 cut(s)	602, 868
BveI	ACCTGC	2 cut(s)	509, 547
Cac8I	GCNNGC	1 cut(s)	621
CfoI	GCGC	2 cut(s)	854, 877
Cfr13I	GGNCC	2 cut(s)	254, 710
Csp6I	GTAC	3 cut(s)	4, 498, 700
CviAII	CATG	7 cut(s)	91, 175, 220, 470, 495, 531, 616
CviQI	GTAC	3 cut(s)	4, 498, 700
DdeI	CTNAG	7 cut(s)	156, 348, 372, 518, 561, 695, 723
DpnI	GATC	2 cut(s)	198, 480
DpnII	GATC	2 cut(s)	196, 478
DrdI	GACNNNNNNGTC	1 cut(s)	531
DseDI	GACNNNNNNGTC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	803
Eco147I	AGGCCT	2 cut(s)	346, 721
Eco47I	GGWCC	2 cut(s)	254, 710
Eco57I	CTGAAG	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	754
Eco91I	GGTNACC	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	45
EcoRII	CCWGG	4 cut(s)	19, 488, 649, 712
FaeI	CATG	7 cut(s)	94, 178, 223, 473, 498, 534, 619
FatI	CATG	7 cut(s)	90, 174, 219, 469, 494, 530, 615
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	855, 858, 878
FokI	GGATG	4 cut(s)	80, 179, 374, 602
Fsp4HI	GCNGC	3 cut(s)	855, 858, 878
FspBI	CTAG	5 cut(s)	161, 233, 405, 705, 746
FspI	TGCGCA	1 cut(s)	853
GlaI	GCGC	2 cut(s)	853, 876
GluI	GCNGC	3 cut(s)	855, 858, 878
GsaI	CCCAGC	1 cut(s)	785
HaeIII	GGCC	4 cut(s)	346, 721, 805, 888
HapII	CCGG	1 cut(s)	802
HhaI	GCGC	2 cut(s)	854, 877
Hin1II	CATG	7 cut(s)	94, 178, 223, 473, 498, 534, 619
Hin6I	GCGC	2 cut(s)	852, 875
HinP1I	GCGC	2 cut(s)	852, 875
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	4 cut(s)	378, 524, 536, 702
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	3 cut(s)	309, 732, 812
Hpy8I	GTNNAC	4 cut(s)	378, 524, 536, 702
HpyAV	CCTTC	3 cut(s)	32, 352, 711
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	8 cut(s)	112, 281, 419, 469, 504, 542, 551, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	7 cut(s)	156, 348, 372, 518, 561, 695, 723
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	7 cut(s)	94, 178, 223, 473, 498, 534, 619
HspAI	GCGC	2 cut(s)	852, 875
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	196, 478
Lsp1109I	GCAGC	2 cut(s)	844, 866
MaeI	CTAG	5 cut(s)	161, 233, 405, 705, 746
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	4 cut(s)	15, 45, 262, 367
MalI	GATC	2 cut(s)	198, 480
MboI	GATC	2 cut(s)	196, 478
MboII	GAAGA	4 cut(s)	71, 239, 248, 619
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	3 cut(s)	271, 414, 449
MmeI	TCCRAC	1 cut(s)	106
MseI	TTAA	4 cut(s)	83, 399, 437, 459
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	4 cut(s)	21, 490, 651, 714
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	4 cut(s)	21, 490, 651, 714
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	196, 478
NlaIII	CATG	7 cut(s)	94, 178, 223, 473, 498, 534, 619
NlaIV	GGNNCC	2 cut(s)	752, 868
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	853
NspI	RCATGY	2 cut(s)	498, 619
PaqCI	CACCTGC	1 cut(s)	547
PceI	AGGCCT	2 cut(s)	346, 721
PkrI	GCNGC	3 cut(s)	856, 859, 879
PpuMI	RGGWCCY	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	4 cut(s)	19, 488, 649, 712
PspEI	GGTNACC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	4 cut(s)	19, 488, 649, 712
PspN4I	GGNNCC	2 cut(s)	752, 868
PspPI	GGNCC	2 cut(s)	254, 710
PspPPI	RGGWCCY	1 cut(s)	710
PstI	CTGCAG	2 cut(s)	506, 544
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	3 cut(s)	5, 499, 701
RsaNI	GTAC	3 cut(s)	4, 498, 700
SaqAI	TTAA	4 cut(s)	83, 399, 437, 459
SatI	GCNGC	3 cut(s)	855, 858, 878
Sau3AI	GATC	2 cut(s)	196, 478
Sau96I	GGNCC	2 cut(s)	254, 710
SbfI	CCTGCAGG	1 cut(s)	506
ScrFI	CCNGG	4 cut(s)	21, 490, 651, 714
SdaI	CCTGCAGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	773
SfcI	CTRYAG	3 cut(s)	502, 540, 890
SinI	GGWCC	2 cut(s)	254, 710
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse8387I	CCTGCAGG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	271, 414, 449
SseBI	AGGCCT	2 cut(s)	346, 721
SsiI	CCGC	1 cut(s)	878
SspI	AATATT	2 cut(s)	108, 555
SspMI	CTAG	5 cut(s)	161, 233, 405, 705, 746
StuI	AGGCCT	2 cut(s)	346, 721
StyD4I	CCNGG	4 cut(s)	19, 488, 649, 712
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	1 cut(s)	844
TasI	AATT	3 cut(s)	271, 414, 449
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	880
Tru1I	TTAA	4 cut(s)	83, 399, 437, 459
Tru9I	TTAA	4 cut(s)	83, 399, 437, 459
TscAI	CASTG	2 cut(s)	609, 868
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	854, 857
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	79, 642, 675
TspRI	CASTG	2 cut(s)	609, 868
VpaK11BI	GGWCC	2 cut(s)	254, 710
XagI	CCTNNNNNAGG	1 cut(s)	505
XceI	RCATGY	2 cut(s)	498, 619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	5 cut(s)	161, 233, 405, 705, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.