Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Reverse (-)

28335515 .. 28341639

Gene Structure 6125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG143100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTCAAGGTGTTATCATCCTCTAGGGCATGCCATCAGCAGGGCTACTTCCATCTTCCAGAAATGCGAAACCAAAAGAAGTCAGGAAGAAAGAGTGGTCTAGTTTTAGACAGGATTAGGAATCAACATGGCAAGCTCCCTCAGAATGTACAGTATCTCTTGATTACACTGATTGCATCCATTCAGTATATGCCTCATGCATACAACTCCTTCCAAGTACCATCTATGAATGCAAATAATGTTGAGACAACTCCAAGTGCTAGTTTTCTCAATGAGGTGCCAAGTGTGAGTGAAAACAATATTGAGATAACTACAAATATTGGTACTGTCAATCAGGTGCCATTTGAGAATCCAAACAACGTGACCATTGAATTAGGTGGGATACCACAAAATTATGGTTCTACAATTGAGGAAATACTGGGTGATAAAGTTGAAGGCCAAACTTATGCGTCTTCTCAGCCAACTTCATCTACACAAGCTTTCTCTCAAACATTACCCCAGCCTCACTCAAGCTCACAATCCAAGGTCTCATCCCTAACAAATTTCTCATCTGTTTACATTGATGGTAAAACAGGATTCCCAATGAGGTGGAAGAAAGATGCAAAGAATAACAAACCATTTAAAACACCAAGAGGCACTTGTGCAAAAGTGGGGATCCAAATGGAACCAAAAGCAGGAACCAACAAGACAATTTGGAAGCCCTGCTATGATTCTGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

9.28

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	277, 337
AclWI	GGATC	2 cut(s)	649, 662
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	3 cut(s)	150, 219, 325
AfiI	CCNNNNNNNGG	2 cut(s)	40, 674
AgsI	TTSAA	3 cut(s)	7, 371, 434
AluBI	AGCT	3 cut(s)	136, 479, 513
AluI	AGCT	3 cut(s)	136, 479, 513
Alw26I	GTCTC	2 cut(s)	239, 532
AlwI	GGATC	2 cut(s)	649, 662
AoxI	GGCC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	654
BanI	GGYRCC	2 cut(s)	277, 337
BbsI	GAAGAC	1 cut(s)	444
BccI	CCATC	4 cut(s)	42, 60, 229, 557
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	239, 532
BfaI	CTAG	3 cut(s)	24, 101, 261
BfuI	GTATCC	1 cut(s)	375
BmiI	GGNNCC	5 cut(s)	279, 339, 656, 666, 679
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	185, 589
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 674
Bse1I	ACTGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	17, 176, 530
BseLI	CCNNNNNNNGG	2 cut(s)	40, 674
BseMII	CTCAG	2 cut(s)	155, 470
BseNI	ACTGG	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	498
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	2 cut(s)	277, 337
BslI	CCNNNNNNNGG	2 cut(s)	40, 674
BsmAI	GTCTC	2 cut(s)	239, 532
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	654
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	154, 469
BspLI	GGNNCC	5 cut(s)	279, 339, 656, 666, 679
BspPI	GGATC	2 cut(s)	649, 662
BspT107I	GGYRCC	2 cut(s)	277, 337
BspTNI	GGTCTC	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	153, 328
BstAUI	TGTACA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	31, 134
BstDEI	CTNAG	2 cut(s)	141, 456
BstF5I	GGATG	3 cut(s)	17, 176, 530
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	2 cut(s)	239, 532
BstMBI	GATC	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	17, 176, 530
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	31, 134
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	149, 218, 324
CviAII	CATG	3 cut(s)	30, 128, 197
CviJI	RGCY	8 cut(s)	45, 136, 438, 460, 479, 502, 513, 700
CviKI_1	RGCY	8 cut(s)	45, 136, 438, 460, 479, 502, 513, 700
CviQI	GTAC	3 cut(s)	149, 218, 324
DdeI	CTNAG	2 cut(s)	141, 456
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
DraI	TTTAAA	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	3 cut(s)	33, 131, 200
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	3 cut(s)	29, 127, 196
FokI	GGATG	3 cut(s)	4, 163, 517
FspBI	CTAG	3 cut(s)	24, 101, 261
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	438
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	33, 131, 200
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	121, 349, 576, 710
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	144, 715
Hpy188III	TCNNGA	3 cut(s)	59, 84, 160
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	220, 428
HpyCH4III	ACNGT	2 cut(s)	153, 328
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	176, 200, 233, 602, 644
HpyF3I	CTNAG	2 cut(s)	141, 456
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	33, 131, 200
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	1 cut(s)	141
LweI	GCATC	2 cut(s)	185, 589
MaeI	CTAG	3 cut(s)	24, 101, 261
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	4 cut(s)	47, 99, 444, 604
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	5 cut(s)	371, 391, 405, 541, 690
MnlI	CCTC	8 cut(s)	31, 150, 204, 268, 403, 513, 579, 626
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	1 cut(s)	621
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	235
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	3 cut(s)	33, 131, 200
NlaIV	GGNNCC	5 cut(s)	279, 339, 656, 666, 679
NmuCI	GTSAC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	4 cut(s)	121, 349, 576, 710
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	5 cut(s)	279, 339, 656, 666, 679
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	3 cut(s)	150, 219, 325
RsaNI	GTAC	3 cut(s)	149, 218, 324
SaqAI	TTAA	1 cut(s)	621
Sau3AI	GATC	1 cut(s)	654
SfaNI	GCATC	2 cut(s)	185, 589
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	371, 391, 405, 541, 690
SspI	AATATT	2 cut(s)	301, 319
SspMI	CTAG	3 cut(s)	24, 101, 261
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	153, 328
TaiI	ACGT	1 cut(s)	363
TasI	AATT	5 cut(s)	371, 391, 405, 541, 690
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	4 cut(s)	121, 349, 576, 710
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	242, 456
TspRI	CASTG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	3 cut(s)	24, 101, 261
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.