RchiOBHm_Chr6g0255261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004256
Physical Location & Seq
Reverse (-)
10608403 .. 10610028
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22897

Sequence Viewer

Length: 807 bp
ATGGAGATTCATCATGGAGGCAGGTTCTATAGGTTGGGTAGTGGTAGTAGGCAGTACAAGGGAGGTGAGGTAGTGTATGTTGATAGATTAGATCCTGATAAGATTTCCTGGCCAGATTTGAATATCTATGCTGAAGACTTGGGTTATAGAGAACCCCCAATTATGTATTGGTTTTTGTTACCTGGAAGTATTCAGGGAGAAGGTTGGTTACCAATATGTGAAGACAAATATGTGTTAGATATGTTGAAGTTTATGCCAAGTAATCGGATATTGCAGATTTACATTGTTGGGGGAGGTGTAAGAAAAAAAAAGGAAGCTGAGTTAGAGGATGAGGGTGGGGGTTCTCCTAAAGAAGTTGATCACCAAAAGTATATTGGCAATGGGGTAGAAAACCTAGAAGAAGTGATTGATGGTGATCTTGCTGTGACAACTTTACATGGGGCAAAGGTTTCAAGTAAGGCAAGTGGAAAGAGAAACAAGGGAGGTAGGCCAAAGAATAAGAAGGATGTGGTTACTCACTTGACAAACCAGTTTATAAATGTCAAGGCTAGTGAGACAATTGCAGGTGATAATCTAGTGGCTGAAAATAGAAAGAGACCTAGAATGAAGCAAAAAGCATGCAAGATGAAGAAGAAATCCAGACCATATGAAACCAAATTTATGGGGGAAAAAAGTTTTGCTGAAGCAGAAGGCATTCAAGAAGAACCTGAAACATCTGATAGTCATGTACCTGCAGGAGGTGGGAACTTAATGGACTTCCATGTCCACATGCAATCGCTGCAATATTCTCCAAGGGTTATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

7.74

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 2 - 94 9.2e-16 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AarI CACCTGC 1 cut(s) 554
AasI GACNNNNNNGTC 1 cut(s) 761
Acc36I ACCTGC 3 cut(s) 12, 554, 739
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 2 cut(s) 153, 702
AfaI GTAC 2 cut(s) 56, 729
AfiI CCNNNNNNNGG 1 cut(s) 737
AgsI TTSAA 4 cut(s) 121, 247, 453, 698
AjnI CCWGG 2 cut(s) 107, 181
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 548, 589
AlwI GGATC 1 cut(s) 86
AoxI GGCC 2 cut(s) 110, 488
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 1 cut(s) 656
Asp700I GAANNNNTTC 1 cut(s) 693
AsuHPI GGTGA 4 cut(s) 77, 353, 425, 578
BalI TGGCCA 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 2 cut(s) 141, 228
BbvI GCAGC 1 cut(s) 765
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 109, 183
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 548, 589
BfaI CTAG 5 cut(s) 395, 549, 575, 600, 805
BfmI CTRYAG 2 cut(s) 28, 732
BfuAI ACCTGC 3 cut(s) 12, 554, 739
BisI GCNGC 1 cut(s) 779
BlsI GCNGC 1 cut(s) 780
Bme1390I CCNGG 2 cut(s) 109, 183
BmrFI CCNGG 2 cut(s) 109, 183
BpiI GAAGAC 2 cut(s) 141, 228
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 109, 183
BseDI CCNNGG 1 cut(s) 791
BseGI GGATG 2 cut(s) 334, 511
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 529
BseXI GCAGC 1 cut(s) 765
BshFI GGCC 2 cut(s) 112, 490
BslI CCNNNNNNNGG 1 cut(s) 737
BsmAI GTCTC 2 cut(s) 548, 589
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 2 cut(s) 112, 490
Bso31I GGTCTC 1 cut(s) 589
Bsp143I GATC 3 cut(s) 91, 358, 415
BspANI GGCC 2 cut(s) 112, 490
BspCNI CTCAG 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 3 cut(s) 12, 554, 739
BspPI GGATC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 791
BssMI GATC 3 cut(s) 91, 358, 415
BssT1I CCWWGG 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 109, 183
BstAPI GCANNNNNTGC 1 cut(s) 778
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 318
BstEII GGTNACC 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 334, 511
BstKTI GATC 3 cut(s) 94, 361, 418
BstMAI GTCTC 2 cut(s) 548, 589
BstMBI GATC 3 cut(s) 91, 358, 415
BstMWI GCNNNNNNNGC 1 cut(s) 778
BstNI CCWGG 2 cut(s) 109, 183
BstNSI RCATGY 2 cut(s) 621, 772
BstPI GGTNACC 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 107, 181
BstSFI CTRYAG 2 cut(s) 28, 732
BstV1I GCAGC 1 cut(s) 765
BstV2I GAAGAC 2 cut(s) 141, 228
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 2 cut(s) 112, 490
BtsCI GGATG 2 cut(s) 334, 511
BveI ACCTGC 3 cut(s) 12, 554, 739
Cac8I GCNNGC 1 cut(s) 619
Csp6I GTAC 2 cut(s) 55, 728
CviAII CATG 6 cut(s) 14, 437, 618, 725, 761, 769
CviJI RGCY 5 cut(s) 112, 317, 490, 548, 581
CviKI_1 RGCY 5 cut(s) 112, 317, 490, 548, 581
CviQI GTAC 2 cut(s) 55, 728
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 93, 360, 417
DpnII GATC 3 cut(s) 91, 358, 415
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
EaeI YGGCCR 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 153, 702
Eco91I GGTNACC 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO65I GGTNACC 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 107, 181
EcoT14I CCWWGG 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 791
FaeI CATG 6 cut(s) 17, 440, 621, 728, 764, 772
FatI CATG 6 cut(s) 13, 436, 617, 724, 760, 768
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 779
FokI GGATG 2 cut(s) 341, 518
Fsp4HI GCNGC 1 cut(s) 779
FspBI CTAG 5 cut(s) 395, 549, 575, 600, 805
GluI GCNGC 1 cut(s) 779
HaeIII GGCC 2 cut(s) 112, 490
Hin1II CATG 6 cut(s) 17, 440, 621, 728, 764, 772
HinfI GANTC 1 cut(s) 7
HphI GGTGA 4 cut(s) 77, 353, 425, 578
Hpy166II GTNNAC 1 cut(s) 766
Hpy188I TCNGA 2 cut(s) 267, 718
Hpy188III TCNNGA 3 cut(s) 95, 639, 698
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 3 cut(s) 194, 496, 683
HpyCH4V TGCA 6 cut(s) 274, 563, 621, 734, 772, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 778
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 6 cut(s) 17, 440, 621, 728, 764, 772
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 91, 358, 415
Lsp1109I GCAGC 1 cut(s) 765
MaeI CTAG 5 cut(s) 395, 549, 575, 600, 805
MaeIII GTNAC 4 cut(s) 177, 207, 424, 511
MalI GATC 3 cut(s) 93, 360, 417
MboI GATC 3 cut(s) 91, 358, 415
MboII GAAGA 6 cut(s) 146, 233, 410, 640, 643, 713
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 3 cut(s) 159, 558, 656
MluNI TGGCCA 1 cut(s) 112
MnlI CCTC 8 cut(s) 11, 56, 61, 287, 319, 325, 476, 731
Mox20I TGGCCA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 693
MscI TGGCCA 1 cut(s) 112
MseI TTAA 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 109, 183
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 2 cut(s) 109, 183
MwoI GCNNNNNNNGC 1 cut(s) 778
NdeI CATATG 1 cut(s) 646
NdeII GATC 3 cut(s) 91, 358, 415
NlaIII CATG 6 cut(s) 17, 440, 621, 728, 764, 772
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 2 cut(s) 621, 772
PaeI GCATGC 1 cut(s) 621
PaqCI CACCTGC 1 cut(s) 554
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 780
PsiI TTATAA 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 107, 181
PspEI GGTNACC 1 cut(s) 207
PspGI CCWGG 2 cut(s) 107, 181
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 56, 729
RsaNI GTAC 2 cut(s) 55, 728
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 1 cut(s) 779
Sau3AI GATC 3 cut(s) 91, 358, 415
SbfI CCTGCAGG 1 cut(s) 736
ScrFI CCNGG 2 cut(s) 109, 183
SdaI CCTGCAGG 1 cut(s) 736
SfcI CTRYAG 2 cut(s) 28, 732
SphI GCATGC 1 cut(s) 621
Sse8387I CCTGCAGG 1 cut(s) 736
Sse9I AATT 3 cut(s) 159, 558, 656
SspI AATATT 1 cut(s) 785
SspMI CTAG 5 cut(s) 395, 549, 575, 600, 805
StyD4I CCNGG 2 cut(s) 107, 181
StyI CCWWGG 1 cut(s) 791
TasI AATT 3 cut(s) 159, 558, 656
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 1 cut(s) 778
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 3 cut(s) 620, 641, 663
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 1 cut(s) 656
XceI RCATGY 2 cut(s) 621, 772
XcmI CCANNNNNNNNNTGG 2 cut(s) 165, 371
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 5 cut(s) 395, 549, 575, 600, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.