RLG00000013904

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004256
Physical Location & Seq
Forward (+)
44028408 .. 44029878
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013904

Sequence Viewer

Length: 1050 bp
ATGGTGAACTATTGGAGCTATTTCAAAATCGATAGAGAGGCAGAACCAAATAATGGTGAATGGTTCACATTAAAGATTAATCATGGTGGAAGATTCTACAGAACTACAAGTGGTAGTCGATATTATAAGGGAGGTGAGAAGCTGTTTGTTGATAAGCTCGACCGAGACATAATTGCATGGACTTCTTTAAACTGGTATGCTGAAGATCTTGGGTATCGAGACCTACCATTAACATACTGGTTTAAGGTTCCTGAAAGCAGAGATGGAGAAGGTTTCTTAGCCATCAAGGGTGACAAAGATGTAACAGACATGCTTACATTTTTACAAAATACAAATATACTCCAATTGTATGATGTTTCTGGGAGTGTTAGAAGAAAAGAAGAAGCAGAGTATGAATGGAAAAATGGGATAGCTCCTCCAAATGTGGACCATGAAAAGTACATTGACAATGTCATTGATGATTTAGAAGAAGTGGTCCAAGCAAGACATGGCTCAGTTGAGGAGAATTTAATACAAAATGTAGATGAGACAGTAAGTAATAAGGGTGTTGCTGCTGTGCATTTATCTGAGGCAAACAAAACTTCCAAAGATAAGGGAAAAAGAAAAGTCTCACAAACCACGAAGAAGAGAAAAAGTGGTAAGGCCAAAGCATTGGTAAATTCATTTGCATATGTTGCAGACTCTACAAATTTGGCTGAAGTTGGAAGTTCAAGTAGAGGTGTAGTGGAGAAAGAAATGGTGAAAAGGAAGGCTACCGGTAGAAAAAAAGTGAGAGAAAGTAGATATGATACTCGTTTTAAAGGGGAGATGAGTTATGTTGATCAGCTAGATGATAAGGAGGAGGAGGAACCAACTTCTGACAGTGATGATCCAACCAATGAAGATCTTATAGATAGTGATTACGAGTTGCATCCAGAAGATGATGGAGTGTTATTCAAGGCTAATGTTGATGGTGATCCTGGAAATGTGAATGAGTATGAAGATATGGGCTATGCAGGGAATATATCAGATGGAGGAGATGAAGAGAGTGAGAGATTTGATATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

350

Amino Acids

39.75

Weight (kDa)

4.76

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 20 - 112 5.7e-15 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 53
AclWI GGATC 2 cut(s) 863, 950
AcsI RAATTY 3 cut(s) 505, 658, 688
AcuI CTGAAG 2 cut(s) 222, 717
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 3 cut(s) 25, 711, 937
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 5 cut(s) 18, 142, 157, 413, 826
AluI AGCT 5 cut(s) 18, 142, 157, 413, 826
Alw26I GTCTC 4 cut(s) 159, 213, 521, 613
AlwI GGATC 2 cut(s) 863, 950
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 3 cut(s) 505, 658, 688
AseI ATTAAT 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 427, 475
AsuHPI GGTGA 6 cut(s) 16, 68, 146, 302, 751, 965
AvaII GGWCC 2 cut(s) 427, 475
BbvI GCAGC 1 cut(s) 538
BccI CCATC 5 cut(s) 257, 290, 917, 944, 1004
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 4 cut(s) 159, 213, 521, 613
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 1 cut(s) 97
BglII AGATCT 2 cut(s) 205, 883
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 1 cut(s) 960
Bme18I GGWCC 2 cut(s) 427, 475
BmgT120I GGNCC 2 cut(s) 427, 475
BmiI GGNNCC 2 cut(s) 249, 849
BmrFI CCNGG 1 cut(s) 960
BmsI GCATC 1 cut(s) 919
Bsa29I ATCGAT 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 755
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 197, 242
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 960
BseCI ATCGAT 1 cut(s) 30
BseGI GGATG 1 cut(s) 910
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 507, 558
BseNI ACTGG 2 cut(s) 197, 242
BseRI GAGGAG 5 cut(s) 405, 515, 854, 857, 1029
BseXI GCAGC 1 cut(s) 538
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 644
BshTI ACCGGT 1 cut(s) 755
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 756
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 4 cut(s) 159, 213, 521, 613
BsnI GGCC 1 cut(s) 644
Bso31I GGTCTC 1 cut(s) 213
Bsp143I GATC 5 cut(s) 205, 820, 868, 883, 955
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 2 cut(s) 506, 559
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 249, 849
BspPI GGATC 2 cut(s) 863, 950
BspTNI GGTCTC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 2 cut(s) 197, 242
BssAI RCCGGY 1 cut(s) 755
BssMI GATC 5 cut(s) 205, 820, 868, 883, 955
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 2 cut(s) 532, 863
Bst6I CTCTTC 2 cut(s) 620, 1017
BstAPI GCANNNNNTGC 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 277, 493, 567
BstF5I GGATG 1 cut(s) 910
BstKTI GATC 5 cut(s) 208, 823, 871, 886, 958
BstMAI GTCTC 4 cut(s) 159, 213, 521, 613
BstMBI GATC 5 cut(s) 205, 820, 868, 883, 955
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 958
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 538
BstX2I RGATCY 2 cut(s) 205, 883
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 2 cut(s) 205, 883
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 1 cut(s) 644
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 1 cut(s) 868
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 427, 475
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 1 cut(s) 439
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 5 cut(s) 83, 177, 310, 431, 488
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 277, 493, 567
DpnI GATC 5 cut(s) 207, 822, 870, 885, 957
DpnII GATC 5 cut(s) 205, 820, 868, 883, 955
DraI TTTAAA 2 cut(s) 189, 799
Eam1104I CTCTTC 2 cut(s) 620, 1017
EarI CTCTTC 2 cut(s) 620, 1017
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 427, 475
Eco57I CTGAAG 2 cut(s) 222, 717
EcoRII CCWGG 1 cut(s) 958
FaeI CATG 5 cut(s) 86, 180, 313, 434, 491
FatI CATG 5 cut(s) 82, 176, 309, 430, 487
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 1 cut(s) 897
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 1 cut(s) 827
GluI GCNGC 1 cut(s) 552
HaeIII GGCC 1 cut(s) 644
HapII CCGG 1 cut(s) 756
Hin1II CATG 5 cut(s) 86, 180, 313, 434, 491
HinfI GANTC 2 cut(s) 93, 680
HpaII CCGG 1 cut(s) 756
HphI GGTGA 6 cut(s) 16, 68, 146, 302, 751, 965
Hpy166II GTNNAC 3 cut(s) 7, 66, 427
Hpy188I TCNGA 3 cut(s) 568, 859, 1009
Hpy188III TCNNGA 3 cut(s) 218, 251, 914
Hpy8I GTNNAC 3 cut(s) 7, 66, 427
HpyAV CCTTC 2 cut(s) 263, 742
HpyCH4III ACNGT 2 cut(s) 532, 863
HpyCH4V TGCA 6 cut(s) 176, 559, 668, 677, 910, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 3 cut(s) 277, 493, 567
Hsp92II CATG 5 cut(s) 86, 180, 313, 434, 491
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 205, 820, 868, 883, 955
LmnI GCTCC 2 cut(s) 15, 418
LpnPI CCDG 9 cut(s) 178, 223, 264, 345, 769, 927, 945, 972, 981
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 1 cut(s) 919
MaeI CTAG 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 290, 301
MalI GATC 5 cut(s) 207, 822, 870, 885, 957
MboI GATC 5 cut(s) 205, 820, 868, 883, 955
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 2 cut(s) 205, 883
MluCI AATT 5 cut(s) 171, 344, 505, 658, 688
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 2 cut(s) 682, 896
MseI TTAA 7 cut(s) 71, 78, 188, 230, 243, 509, 798
MspI CCGG 1 cut(s) 756
MspR9I CCNGG 1 cut(s) 960
MunI CAATTG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeI CATATG 1 cut(s) 670
NdeII GATC 5 cut(s) 205, 820, 868, 883, 955
NlaIII CATG 5 cut(s) 86, 180, 313, 434, 491
NlaIV GGNNCC 2 cut(s) 249, 849
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 313
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 958
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 249, 849
PspPI GGNCC 2 cut(s) 427, 475
PsuI RGATCY 2 cut(s) 205, 883
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 7 cut(s) 71, 78, 188, 230, 243, 509, 798
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 5 cut(s) 205, 820, 868, 883, 955
Sau96I GGNCC 2 cut(s) 427, 475
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 1 cut(s) 960
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 427, 475
Sse9I AATT 5 cut(s) 171, 344, 505, 658, 688
SspMI CTAG 1 cut(s) 827
StyD4I CCNGG 1 cut(s) 958
TaaI ACNGT 2 cut(s) 532, 863
TaqI TCGA 4 cut(s) 30, 118, 159, 217
TaqII GACCGA 1 cut(s) 177
TasI AATT 5 cut(s) 171, 344, 505, 658, 688
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 7 cut(s) 71, 78, 188, 230, 243, 509, 798
Tru9I TTAA 7 cut(s) 71, 78, 188, 230, 243, 509, 798
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 6 cut(s) 408, 447, 651, 894, 993, 1035
TspRI CASTG 1 cut(s) 868
Tth111I GACNNNGTC 1 cut(s) 449
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 427, 475
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 3 cut(s) 505, 658, 688
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 2 cut(s) 234, 485
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.