Rroxscaffold_2G00108680

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
32763796 .. 32764288
493 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00108680.1

Sequence Viewer

Length: 402 bp
ATGCAGGTTGAAGCTCAAAATGTTAACCAAGTTGATAATTCTGATGATGTTCTAAATTCTGCAAATCATGTGGCAAACGAGAATGGCATGCCAAATGAAAATGTTGATGTTGATGCTATGATGCAGGAGGTAAACCATCAGACACCCACACAACAATCTGAACTAGTTTATGTCCAAAGTGTGGCTTCATCTCAACCAGTGCATTTATCAGAACCAAGTTGGCAATCTTTCCTTGCTCCAACCAGTTCTTCACAACCTATTGTATCATCAATGCCATCATTCTCAAACATGTTCAATGATTCACTAACAGTGAGGTCCAAGTCATATGCAAGGAAGCCACCTATGAGGTCTGACTCTATTAAAGGACCAAAAGATGCCAACAAGAAGGTTTGGAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

5.2

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AcsI RAATTY 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 2 cut(s) 11, 295
AhlI ACTAGT 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AoxI GGCC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 315, 365
AvaII GGWCC 2 cut(s) 315, 365
BccI CCATC 2 cut(s) 144, 283
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 315, 365
BmgT120I GGNCC 2 cut(s) 315, 365
BmsI GCATC 3 cut(s) 103, 111, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 197, 243
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 197, 243
BshFI GGCC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 181
BsnI GGCC 1 cut(s) 397
BspANI GGCC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 197, 243
Bst4CI ACNGT 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 91, 292
BsuRI GGCC 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 204, 315
Cac8I GCNNGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 315, 365
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 3 cut(s) 68, 88, 289
CviJI RGCY 4 cut(s) 14, 185, 337, 397
CviKI_1 RGCY 4 cut(s) 14, 185, 337, 397
Eco147I AGGCCT 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 315, 365
FaeI CATG 3 cut(s) 71, 91, 292
FaiI YATR 8 cut(s) 69, 89, 119, 171, 290, 325, 327, 344
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FatI CATG 3 cut(s) 67, 87, 288
FauNDI CATATG 1 cut(s) 325
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 3 cut(s) 71, 91, 292
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 299, 353
HpaI GTTAAC 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 25, 133
Hpy188I TCNGA 5 cut(s) 43, 141, 160, 211, 352
Hpy8I GTNNAC 2 cut(s) 25, 133
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 4, 62, 124, 202, 329
Hsp92II CATG 3 cut(s) 71, 91, 292
KspAI GTTAAC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 110, 210, 256
LweI GCATC 3 cut(s) 103, 111, 364
MaeI CTAG 1 cut(s) 164
MboII GAAGA 1 cut(s) 240
MluCI AATT 2 cut(s) 37, 55
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 4 cut(s) 121, 306, 339, 387
MseI TTAA 2 cut(s) 24, 360
NdeI CATATG 1 cut(s) 325
NlaIII CATG 3 cut(s) 71, 91, 292
NspI RCATGY 2 cut(s) 91, 292
PaeI GCATGC 1 cut(s) 91
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 288
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 181
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 288
PspPI GGNCC 2 cut(s) 315, 365
SaqAI TTAA 2 cut(s) 24, 360
Sau96I GGNCC 2 cut(s) 315, 365
SchI GAGTC 1 cut(s) 347
SetI ASST 8 cut(s) 9, 16, 132, 259, 317, 343, 350, 390
SfaNI GCATC 3 cut(s) 103, 111, 364
SinI GGWCC 2 cut(s) 315, 365
SpeI ACTAGT 1 cut(s) 163
SphI GCATGC 1 cut(s) 91
Sse9I AATT 2 cut(s) 37, 55
SseBI AGGCCT 1 cut(s) 397
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 1 cut(s) 397
TaaI ACNGT 1 cut(s) 310
TasI AATT 2 cut(s) 37, 55
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 24, 360
Tru9I TTAA 2 cut(s) 24, 360
TscAI CASTG 2 cut(s) 204, 315
TspDTI ATGAA 2 cut(s) 111, 177
TspRI CASTG 2 cut(s) 204, 315
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 315, 365
XapI RAATTY 1 cut(s) 55
XceI RCATGY 2 cut(s) 91, 292
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.