Rroxscaffold_178G00437270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000178
OG0004256
Physical Location & Seq
Reverse (-)
76558 .. 77395
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_178G00437270.1

Sequence Viewer

Length: 273 bp
ATGACCGATAAAGTCGAATCGTCCGACCCGGGACCAAGAGGGATTTCAAAGACCGCGATTGTCGAGCGGAAGAAGGCAAGAATGTCCTCGTCGTCGACGAGGCCATCTACGATGACAACTCAGTCATCACTCTCCACCCCGAGACCATGGAGAAGCTTTAGCTCTTTAGGCGACACAATCCTCATCAAGGTTCGAGCAAAAAGGCCCCTACTCCTCACCCGCGAGTTGTGCCTCGATTATCCGTTGGATGCAACAACTAAAGAAGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.95

Weight (kDa)

10.2

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 95
AccII CGCG 2 cut(s) 56, 222
AciI CCGC 3 cut(s) 54, 67, 220
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 2 cut(s) 156, 162
AluI AGCT 2 cut(s) 156, 162
Alw26I GTCTC 1 cut(s) 136
Ama87I CYCGRG 2 cut(s) 28, 139
AoxI GGCC 2 cut(s) 101, 203
AspS9I GGNCC 2 cut(s) 32, 204
AsuC2I CCSGG 2 cut(s) 29, 30
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 28, 139
AvaII GGWCC 1 cut(s) 32
BccI CCATC 1 cut(s) 112
BcnI CCSGG 2 cut(s) 29, 30
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 29, 30
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 2 cut(s) 28, 139
BmgT120I GGNCC 2 cut(s) 32, 204
BmiI GGNNCC 2 cut(s) 33, 206
BmrFI CCNGG 2 cut(s) 29, 30
BmsI GCATC 1 cut(s) 238
BpuMI CCSGG 2 cut(s) 29, 30
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 28, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 28, 146
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 203
Bsh1236I CGCG 2 cut(s) 56, 222
BshFI GGCC 2 cut(s) 103, 205
BsiHKCI CYCGRG 2 cut(s) 28, 139
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 103, 205
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 2 cut(s) 28, 139
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 3 cut(s) 54, 67, 220
BspANI GGCC 2 cut(s) 103, 205
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 2 cut(s) 56, 222
BspLI GGNNCC 2 cut(s) 33, 206
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 28, 146
BssT1I CCWWGG 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 146
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 2 cut(s) 56, 222
BstMAI GTCTC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 168, 228
BstSCI CCNGG 2 cut(s) 27, 28
BstUI CGCG 2 cut(s) 56, 222
BsuRI GGCC 2 cut(s) 103, 205
BtgI CCRYGG 1 cut(s) 146
BtsCI GGATG 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 32, 204
Cfr9I CCCGGG 1 cut(s) 28
CviAII CATG 1 cut(s) 147
CviJI RGCY 5 cut(s) 103, 156, 162, 205, 266
CviKI_1 RGCY 5 cut(s) 103, 156, 162, 205, 266
DdeI CTNAG 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 32
Eco88I CYCGRG 2 cut(s) 28, 139
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 150
FaiI YATR 1 cut(s) 148
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 146
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 95
FokI GGATG 1 cut(s) 260
FspBI CTAG 1 cut(s) 271
HaeIII GGCC 2 cut(s) 103, 205
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 150
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 3 cut(s) 94, 97, 100
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 228
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 150
LpnPI CCDG 1 cut(s) 42
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 67
MboII GAAGA 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 48, 225
MnlI CCTC 6 cut(s) 32, 93, 97, 191, 224, 242
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 29, 30
MvnI CGCG 2 cut(s) 56, 222
MwoI GCNNNNNNNGC 2 cut(s) 168, 228
NciI CCSGG 2 cut(s) 29, 30
NcoI CCATGG 1 cut(s) 146
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 2 cut(s) 33, 206
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 95
PfeI GAWTC 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 33, 206
PspPI GGNCC 2 cut(s) 32, 204
SalI GTCGAC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 32, 204
ScrFI CCNGG 2 cut(s) 29, 30
SetI ASST 3 cut(s) 158, 164, 192
SfaNI GCATC 1 cut(s) 238
SgrDI CGTCGACG 1 cut(s) 94
SinI GGWCC 1 cut(s) 32
SmaI CCCGGG 1 cut(s) 30
SsiI CCGC 3 cut(s) 54, 67, 220
SspMI CTAG 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 27, 28
StyI CCWWGG 1 cut(s) 146
TaqI TCGA 5 cut(s) 15, 63, 95, 193, 234
TaqII GACCGA 1 cut(s) 20
TfiI GAWTC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 231
TspMI CCCGGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.