Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004256

Physical Location & Seq

Genomic Coordinates Reverse (-)

66530428 .. 66533464

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTGGAAGATTCTACAGAACTACAAGTGGTAGTCGATATTATAATGGAGGACCCACCATTAACATATTGGTTTAAGGTTCCTGGAAGCAGAGATGGAGAGGGTTTCTTAGCCATCAAGGGTGACAAAGATGTAACAGACATGCTTGCATTTCTACAAAATACAAATATACTTCAATTGTATGTTGTTTCTGGAGGTGTTAGAAGAAAAGAACAAGCAGAGTATGAATGGAAAAATGGGATAGCTCCTCCAGATGTGGACCATGAAAAGTATATCGACAATGTCATTGATGATTTAGAAGAAGTGGTCCAAGTTAGAGATGGCTCCATTGAGGAGAATTTAATGCAAAATGTAGATAAGATTGTAAGTAATAAGGGTGTTGCTGCTGTGCATTTATCTGAGTTAAACAAAACTTCCAAAGATAAGGGAAAAACAAAAGTCTCACAAAGCACCAAGAAGAGAAAAAGTGGTAAGGCCAAAGCGTTTGTAAATGCATTTGCATATGTTGTAGACTCCAGAAATTTGGCTGAAGTTCGAAGTTCAAATACAGGTGTAGTGGAGAAAGAAATGGTACCATCTATGAATGCAAATAATGTTGACACAACTCCAAATGCTAGTTTTGTCAATGAGGTGCCAAGTGCGATTGAAAACAATATTGAGACAACTACAATTCTTGGTAATGTCAATCAGGTGCTATTTGAAAATTCAAATAATGTGACCATTGAATTAGGTGGGATACCACAAAATGATGGTTCTGCAATTGAGAAAATACTTGGTGATAGAGTAGAAGACCAAACTTATGCATCTTCTCTGCCAAATTCATCTACACAAGCTTTCTCTCAAACATTACCCAAGCCTCACTCAAGCTCACAATCTAAGGTCTCATCCCCAGCAAATTTCTCATCTGTTTACATTGATGGTAAAACAGGATTCCCAATGAGGTGGAAGTCAGCTGCAAAGAATGGCAAACCATTTAAAACACCAAGAGGCAATTGTGCAAAAGTGGGGATCCAAAAGGAACCAAAAGCAGGAACCAACAAGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.12

Weight (kDa)

5.64

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004256)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0464961 RchiOBHm_Chr6g0255261
rosa_laevigata	RLG00000009797 RLG00000013904 RLG00000017951 RLG00000020592 RLG00000031953
rosa_multiflora	Rmu_sc0007235.1_g000002
rosa_roxburghii	Rroxscaffold_178G00437270 Rroxscaffold_1G00042710 Rroxscaffold_2G00108680 Rroxscaffold_2G00153900 Rroxscaffold_7G00205440
rosa_samantha	Rh2AG195700 Rh2AG195800 Rh2DG203200 Rh2DG203300 Rh3AG324200 Rh3BG241700 Rh3BG314600 Rh3CG356600 Rh4AG041500 Rh4AG218600 Rh4DG143100 Rh4DG145700 Rh4DG308900 Rh6BG089000 Rh6CG041500 Rh6DG037800 Rh7AG355100 Rh7BG392400 Rh7CG372300
rosa_wichuraiana	Rw4G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc65I	GGTACC	1 cut(s)	571
AccB1I	GGYRCC	2 cut(s)	571, 631
AccI	GTMKAC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	1003, 1016
AcsI	RAATTY	5 cut(s)	337, 520, 703, 817, 895
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	1028
AgsI	TTSAA	6 cut(s)	176, 543, 647, 701, 708, 725
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	245, 833, 867, 953
AluI	AGCT	4 cut(s)	245, 833, 867, 953
Alw26I	GTCTC	3 cut(s)	445, 653, 886
AlwI	GGATC	2 cut(s)	1003, 1016
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	383, 953
ApoI	RAATTY	5 cut(s)	337, 520, 703, 817, 895
Asp718I	GGTACC	1 cut(s)	571
AspS9I	GGNCC	3 cut(s)	52, 259, 307
AsuHPI	GGTGA	2 cut(s)	134, 788
AsuII	TTCGAA	1 cut(s)	535
AvaII	GGWCC	3 cut(s)	52, 259, 307
BamHI	GGATCC	1 cut(s)	1008
BanI	GGYRCC	2 cut(s)	571, 631
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	2 cut(s)	370, 940
BccI	CCATC	6 cut(s)	89, 122, 314, 583, 743, 911
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	729
BcoDI	GTCTC	3 cut(s)	445, 653, 886
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	2 cut(s)	384, 954
BlsI	GCNGC	2 cut(s)	385, 955
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	3 cut(s)	52, 259, 307
BmgT120I	GGNCC	3 cut(s)	52, 259, 307
BmiI	GGNNCC	8 cut(s)	54, 81, 325, 573, 633, 1010, 1020, 1033
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	795
BpmI	CTGGAG	3 cut(s)	213, 234, 499
Bpu14I	TTCGAA	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	1 cut(s)	1028
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	884
BseLI	CCNNNNNNNGG	1 cut(s)	1028
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	237, 347
BseXI	GCAGC	2 cut(s)	370, 940
BseYI	CCCAGC	1 cut(s)	889
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	2 cut(s)	571, 631
BslI	CCNNNNNNNGG	1 cut(s)	1028
BsmAI	GTCTC	3 cut(s)	445, 653, 886
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	886
Bsp119I	TTCGAA	1 cut(s)	535
Bsp143I	GATC	1 cut(s)	1008
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	8 cut(s)	54, 81, 325, 573, 633, 1010, 1020, 1033
BspPI	GGATC	2 cut(s)	1003, 1016
BspT104I	TTCGAA	1 cut(s)	535
BspT107I	GGYRCC	2 cut(s)	571, 631
BspTNI	GGTCTC	1 cut(s)	886
BssMI	GATC	1 cut(s)	1008
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	109, 399, 876
BstF5I	GGATG	1 cut(s)	884
BstKTI	GATC	1 cut(s)	1011
BstMAI	GTCTC	3 cut(s)	445, 653, 886
BstMBI	GATC	1 cut(s)	1008
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	370, 940
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	1008
BstXI	CCANNNNNNTGG	2 cut(s)	523, 942
BstYI	RGATCY	1 cut(s)	1008
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	884
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	52, 259, 307
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	2 cut(s)	142, 263
CviJI	RGCY	9 cut(s)	113, 245, 324, 476, 527, 833, 856, 867, 953
CviKI_1	RGCY	9 cut(s)	113, 245, 324, 476, 527, 833, 856, 867, 953
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	109, 399, 876
DpnI	GATC	1 cut(s)	1010
DpnII	GATC	1 cut(s)	1008
DraI	TTTAAA	1 cut(s)	976
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	886
Eco47I	GGWCC	3 cut(s)	52, 259, 307
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	82
EcoT22I	ATGCAT	2 cut(s)	496, 805
FaeI	CATG	2 cut(s)	145, 266
FatI	CATG	2 cut(s)	141, 262
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	384, 954
FokI	GGATG	1 cut(s)	871
Fsp4HI	GCNGC	2 cut(s)	384, 954
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	2 cut(s)	384, 954
GsaI	CCCAGC	1 cut(s)	893
GsuI	CTGGAG	3 cut(s)	213, 234, 499
HaeIII	GGCC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	145, 266
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	3 cut(s)	11, 512, 930
HphI	GGTGA	2 cut(s)	134, 788
Hpy166II	GTNNAC	4 cut(s)	259, 511, 598, 910
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	3 cut(s)	192, 251, 516
Hpy8I	GTNNAC	4 cut(s)	259, 511, 598, 910
HpyF3I	CTNAG	3 cut(s)	109, 399, 876
Hsp92II	CATG	2 cut(s)	145, 266
KpnI	GGTACC	1 cut(s)	575
Kzo9I	GATC	1 cut(s)	1008
LmnI	GCTCC	2 cut(s)	250, 329
Lsp1109I	GCAGC	2 cut(s)	370, 940
LweI	GCATC	1 cut(s)	812
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	122, 133, 715
MalI	GATC	1 cut(s)	1010
MboI	GATC	1 cut(s)	1008
MboII	GAAGA	6 cut(s)	20, 216, 311, 469, 798, 800
MfeI	CAATTG	3 cut(s)	176, 759, 991
MflI	RGATCY	1 cut(s)	1008
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	43, 94, 188, 258, 325, 622, 867, 933, 980
Mph1103I	ATGCAT	2 cut(s)	496, 805
MseI	TTAA	5 cut(s)	62, 75, 341, 404, 975
MspA1I	CMGCKG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	3 cut(s)	176, 759, 991
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	1 cut(s)	1008
NlaIII	CATG	2 cut(s)	145, 266
NlaIV	GGNNCC	8 cut(s)	54, 81, 325, 573, 633, 1010, 1020, 1033
NmuCI	GTSAC	2 cut(s)	122, 715
NsiI	ATGCAT	2 cut(s)	496, 805
NspI	RCATGY	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	535
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	11, 930
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	385, 955
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	8 cut(s)	54, 81, 325, 573, 633, 1010, 1020, 1033
PspPI	GGNCC	3 cut(s)	52, 259, 307
PspPPI	RGGWCCY	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	1008
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SaqAI	TTAA	5 cut(s)	62, 75, 341, 404, 975
SatI	GCNGC	2 cut(s)	384, 954
Sau3AI	GATC	1 cut(s)	1008
Sau96I	GGNCC	3 cut(s)	52, 259, 307
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	812
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	3 cut(s)	52, 259, 307
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	82
TaqI	TCGA	3 cut(s)	36, 276, 535
TfiI	GAWTC	2 cut(s)	11, 930
Tru1I	TTAA	5 cut(s)	62, 75, 341, 404, 975
Tru9I	TTAA	5 cut(s)	62, 75, 341, 404, 975
TseFI	GTSAC	2 cut(s)	122, 715
TseI	GCWGC	2 cut(s)	383, 953
Tsp45I	GTSAC	2 cut(s)	122, 715
TspDTI	ATGAA	4 cut(s)	240, 279, 596, 810
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	52, 259, 307
XapI	RAATTY	5 cut(s)	337, 520, 703, 817, 895
XceI	RCATGY	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 317
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	496, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.