Rh7AG355100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004256
Physical Location & Seq
Reverse (-)
45411198 .. 45413990
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG355100.1

Sequence Viewer

Length: 1062 bp
ATGGATGACTCAATGATGCTGGATAGATGGAGATATTTTCTTACTGGTGGAGAGCCACCCATCTACAAAGATGATTTGTTCTCATTGGAGATACACCATGGTGGGAGGTTCTACAGATTGGGCAGTGGTAGTAGACAATATAGAGGAGGTGAAGTAGCATGGTTTGATAATGTTGATCCTGACCATACTTCTTGGCCCTTTTTAAATGAGATTTCGGAAGACTTAGGCTACAGAGAGCCACCAATTCAATATTGGTTCAAGATGCCAGGAAGTAGAGATGGGGAGGAATTGTTGGAATTACATAATGATAGAGATATTGCTAACATGGTTGCATTTAGGACCACAACCAAGTTGTTACAGATATACATAGTAGGTGGAGGTGTTAGAAGAAAAAAGGAAGCAGAGTTAGGGGATGAGACTGGAGAGGGTCCGAAACTAGTTGACCATAAAAAGTACTTGAATAATGTAGTTGAAGATTTAATGGATGTCCAAGAAGTTAATGAGTCTCATGTTGATTTAGATGGTAAAGCTGACAAGGCAGGGAGCTCATATGGGATGAATTTGGGCAACATTGATGATGGGATAGTGAATTGTGATCTACCTATTATGCAATTAAGTGACAGAAATAAGGCAGACAAAAATAAGGGAAAAGTGAAGAAGTTGGGTAGGCCAAAAGTCAAGTTTGGTGGGCAGGGGATTAGAAATGGGTTTGCCATAGTAAAGGCAAGTGAACCATTGCAGTTCGAAGGTGATGCATCTGGTGAAGGCATTCAAATTTTAGCATTAAAAAAAAAAGGTAAGAAGGTTGAAGCTCAAAATGTTAACCAAGTTGATAATTCTGATAATGTTCTAAATTCTGCAAATCATGTGGCAAACGAGAATGGCATGCCAAATGAAAATACTGATGTTGATACTATGATGCAGGAGATACCTGCCTTCTCTGGAGCATACACGTCTGCTCAGGTGAAGGATGTTTTCGAGACTGAGATGGATCATGCTAATAACTCTGTCATAGATGCAACAAGTACCACCATATTTGAAGAAGCAAGAGTATGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

353

Amino Acids

39.4

Weight (kDa)

4.92

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 24 - 122 3.8e-18 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 940
AccI GTMKAC 1 cut(s) 133
AclWI GGATC 2 cut(s) 170, 999
AcsI RAATTY 3 cut(s) 559, 774, 853
AfaI GTAC 2 cut(s) 455, 1027
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 7 cut(s) 248, 259, 460, 473, 773, 809, 1040
AhlI ACTAGT 1 cut(s) 436
AjiI CACGTC 1 cut(s) 954
AjnI CCWGG 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 3 cut(s) 530, 546, 812
AluI AGCT 3 cut(s) 530, 546, 812
Alw21I GWGCWC 1 cut(s) 548
Alw26I GTCTC 3 cut(s) 410, 510, 974
AlwI GGATC 2 cut(s) 170, 999
AoxI GGCC 2 cut(s) 194, 668
ApoI RAATTY 3 cut(s) 559, 774, 853
Asp700I GAANNNNTTC 1 cut(s) 768
AspS9I GGNCC 3 cut(s) 195, 339, 428
AsuHPI GGTGA 4 cut(s) 161, 761, 773, 976
AsuII TTCGAA 1 cut(s) 744
AvaII GGWCC 2 cut(s) 339, 428
BanII GRGCYC 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 548
BccI CCATC 6 cut(s) 21, 68, 272, 515, 572, 982
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 3 cut(s) 410, 510, 974
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 2 cut(s) 112, 229
BfuAI ACCTGC 1 cut(s) 940
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 339, 428
BmgBI CACGTC 1 cut(s) 954
BmgT120I GGNCC 3 cut(s) 195, 339, 428
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 6 cut(s) 6, 252, 742, 764, 909, 1006
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 441, 963
Bpu10I CCTNAGC 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 744
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 275, 305
Bse1I ACTGG 2 cut(s) 49, 424
Bse3DI GCAATG 1 cut(s) 734
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 5 cut(s) 10, 418, 490, 561, 976
BseMI GCAATG 1 cut(s) 734
BseMII CTCAG 2 cut(s) 974, 975
BseNI ACTGG 2 cut(s) 49, 424
BseRI GAGGAG 1 cut(s) 159
BshFI GGCC 2 cut(s) 196, 670
BsiHKAI GWGCWC 1 cut(s) 548
BsmAI GTCTC 3 cut(s) 410, 510, 974
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 2 cut(s) 196, 670
Bsp119I TTCGAA 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 3 cut(s) 175, 595, 991
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 2 cut(s) 196, 670
BspCNI CTCAG 2 cut(s) 973, 976
BspLI GGNNCC 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 2 cut(s) 170, 999
BspT104I TTCGAA 1 cut(s) 744
BsrDI GCAATG 1 cut(s) 734
BsrI ACTGG 2 cut(s) 49, 424
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 175, 595, 991
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 744
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 3 cut(s) 223, 960, 984
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 5 cut(s) 10, 418, 490, 561, 976
BstKTI GATC 3 cut(s) 178, 598, 994
BstMAI GTCTC 3 cut(s) 410, 510, 974
BstMBI GATC 3 cut(s) 175, 595, 991
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 112, 229
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 196, 670
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 954
BtsCI GGATG 5 cut(s) 10, 418, 490, 561, 976
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 1 cut(s) 887
Cfr13I GGNCC 3 cut(s) 195, 339, 428
Csp6I GTAC 2 cut(s) 454, 1026
CspCI CAANNNNNGTGG 6 cut(s) 667, 702, 849, 884, 1018, 1053
CviAII CATG 7 cut(s) 98, 159, 325, 509, 866, 886, 995
CviJI RGCY 8 cut(s) 55, 196, 228, 238, 530, 546, 670, 812
CviKI_1 RGCY 8 cut(s) 55, 196, 228, 238, 530, 546, 670, 812
CviQI GTAC 2 cut(s) 454, 1026
DdeI CTNAG 3 cut(s) 223, 960, 984
DpnI GATC 3 cut(s) 177, 597, 993
DpnII GATC 3 cut(s) 175, 595, 991
DraI TTTAAA 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 339, 428
Eco53kI GAGCTC 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 7 cut(s) 101, 162, 328, 512, 869, 889, 998
FatI CATG 7 cut(s) 97, 158, 324, 508, 865, 885, 994
FauNDI CATATG 1 cut(s) 550
FblI GTMKAC 1 cut(s) 133
FokI GGATG 5 cut(s) 17, 425, 497, 568, 983
FriOI GRGCYC 1 cut(s) 548
FspBI CTAG 1 cut(s) 437
GsuI CTGGAG 2 cut(s) 441, 963
HaeIII GGCC 2 cut(s) 196, 670
Hin1II CATG 7 cut(s) 101, 162, 328, 512, 869, 889, 998
HincII GTYRAC 2 cut(s) 442, 823
HindII GTYRAC 2 cut(s) 442, 823
HinfI GANTC 2 cut(s) 8, 503
HpaI GTTAAC 1 cut(s) 823
HphI GGTGA 4 cut(s) 161, 761, 773, 976
Hpy166II GTNNAC 4 cut(s) 134, 442, 731, 823
Hpy188I TCNGA 3 cut(s) 217, 432, 841
Hpy188III TCNNGA 4 cut(s) 179, 259, 942, 979
Hpy8I GTNNAC 4 cut(s) 134, 442, 731, 823
HpyAV CCTTC 5 cut(s) 740, 758, 796, 946, 961
HpyCH4IV ACGT 1 cut(s) 953
HpyCH4V TGCA 7 cut(s) 332, 610, 739, 755, 860, 922, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 3 cut(s) 223, 960, 984
HpySE526I ACGT 1 cut(s) 953
Hsp92II CATG 7 cut(s) 101, 162, 328, 512, 869, 889, 998
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 3 cut(s) 175, 595, 991
LmnI GCTCC 2 cut(s) 543, 944
LweI GCATC 6 cut(s) 6, 252, 742, 764, 909, 1006
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 953
MaeIII GTNAC 2 cut(s) 354, 617
MalI GATC 3 cut(s) 177, 597, 993
MboI GATC 3 cut(s) 175, 595, 991
MboII GAAGA 5 cut(s) 230, 399, 485, 667, 1052
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 9 cut(s) 243, 287, 296, 559, 589, 611, 774, 835, 853
MlyI GAGTC 2 cut(s) 2, 512
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 99, 137, 140, 277, 371, 418
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 6 cut(s) 203, 479, 498, 614, 785, 822
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 550
NdeII GATC 3 cut(s) 175, 595, 991
NlaIII CATG 7 cut(s) 101, 162, 328, 512, 869, 889, 998
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 1 cut(s) 889
NspV TTCGAA 1 cut(s) 744
OliI CACNNNNGTG 1 cut(s) 99
PaeI GCATGC 1 cut(s) 889
PctI GAATGC 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 768
PleI GAGTC 2 cut(s) 2, 511
PpsI GAGTC 2 cut(s) 2, 511
Psp124BI GAGCTC 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 3 cut(s) 195, 339, 428
RsaI GTAC 2 cut(s) 455, 1027
RsaNI GTAC 2 cut(s) 454, 1026
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 548
SaqAI TTAA 6 cut(s) 203, 479, 498, 614, 785, 822
Sau3AI GATC 3 cut(s) 175, 595, 991
Sau96I GGNCC 3 cut(s) 195, 339, 428
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 2, 512
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 6 cut(s) 6, 252, 742, 764, 909, 1006
SfcI CTRYAG 2 cut(s) 112, 229
SfuI TTCGAA 1 cut(s) 744
SinI GGWCC 2 cut(s) 339, 428
SmiMI CAYNNNNRTG 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 436
SphI GCATGC 1 cut(s) 889
Sse9I AATT 9 cut(s) 243, 287, 296, 559, 589, 611, 774, 835, 853
SspI AATATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 97
TaiI ACGT 1 cut(s) 956
TaqI TCGA 2 cut(s) 744, 978
TasI AATT 9 cut(s) 243, 287, 296, 559, 589, 611, 774, 835, 853
TatI WGTACW 1 cut(s) 453
Tru1I TTAA 6 cut(s) 203, 479, 498, 614, 785, 822
Tru9I TTAA 6 cut(s) 203, 479, 498, 614, 785, 822
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 2 cut(s) 572, 909
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 339, 428
XapI RAATTY 3 cut(s) 559, 774, 853
XceI RCATGY 1 cut(s) 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.