RchiOBHm_Chr2g0086511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003311
Physical Location & Seq
Forward (+)
1644759 .. 1645905
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGGATATGTATATAGCAATCTCCACGATCACAAAAAACAAAAAACAAAAAAAAAACAAAATCCCAAAAATTAGAAAAGCTGTAGAGAAAATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTCGAGATCGTTTCCGCCACGAAGCCCTAGCCCTAACCTTGACTTCACGCTCCGGATCGCGCCGTAGCCCCAATTTTCCTAACCCTAACCCTAACTCCGGCTCTAATGGCGCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCCAATCAACGCGATCGGTACGGCGATCGGATGGTGGCAAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTCAGGCGCGGCGAGGCGTTGAATCCGGCGACGGAAGATAAGAGAGTGGTCGGAGTTGGTGGTAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACAGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCGGCTTTTTTGGCTAAGAACGGTGCGGCGACCAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

229

Amino Acids

25.23

Weight (kDa)

10.35

Isoelectric Point (pI)

67.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
AccII CGCG 4 cut(s) 184, 236, 288, 366
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 6 cut(s) 139, 247, 366, 596, 599, 644
AclWI GGATC 6 cut(s) 187, 349, 477, 477, 490, 580
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 4 cut(s) 115, 221, 492, 514
AgeI ACCGGT 1 cut(s) 492
AgsI TTSAA 3 cut(s) 275, 379, 547
AluBI AGCT 3 cut(s) 80, 581, 606
AluI AGCT 3 cut(s) 80, 581, 606
Alw21I GWGCWC 1 cut(s) 608
Alw26I GTCTC 3 cut(s) 246, 506, 680
AlwI GGATC 6 cut(s) 187, 349, 477, 477, 490, 580
Aor13HI TCCGGA 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 667, 670
AsiGI ACCGGT 1 cut(s) 492
AspLEI GCGC 4 cut(s) 186, 236, 238, 366
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 324, 509
AsuHPI GGTGA 3 cut(s) 349, 361, 562
AvaII GGWCC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 359
BamHI GGATCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 608
BbvI GCAGC 2 cut(s) 654, 657
BccI CCATC 3 cut(s) 301, 334, 547
BceAI ACGGC 3 cut(s) 114, 171, 313
BcnI CCSGG 2 cut(s) 324, 509
BcoDI GTCTC 3 cut(s) 246, 506, 680
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 6 cut(s) 247, 367, 599, 645, 668, 671
BlsI GCNGC 6 cut(s) 248, 368, 600, 646, 669, 672
Bme1390I CCNGG 2 cut(s) 324, 509
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 4 cut(s) 321, 484, 501, 502
BmrFI CCNGG 2 cut(s) 324, 509
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 324, 509
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 3 cut(s) 176, 262, 492
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 221, 492, 514
Bse118I RCCGGY 2 cut(s) 492, 619
Bse21I CCTNAGG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 468
BseAI TCCGGA 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 312, 562
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 4 cut(s) 115, 221, 492, 514
BseMII CTCAG 1 cut(s) 373
BsePI GCGCGC 1 cut(s) 234
BseRI GAGGAG 2 cut(s) 271, 458
BseXI GCAGC 2 cut(s) 654, 657
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 4 cut(s) 184, 236, 288, 366
Bsh1285I CGRYCG 3 cut(s) 267, 292, 304
BshTI ACCGGT 1 cut(s) 492
BsiEI CGRYCG 3 cut(s) 267, 292, 304
BsiHKAI GWGCWC 1 cut(s) 608
BsiSI CCGG 9 cut(s) 177, 222, 250, 263, 323, 383, 493, 509, 620
BslFI GGGAC 2 cut(s) 109, 513
BslI CCNNNNNNNGG 4 cut(s) 115, 221, 492, 514
BsmAI GTCTC 3 cut(s) 246, 506, 680
BsmBI CGTCTC 2 cut(s) 506, 680
BsmFI GGGAC 2 cut(s) 109, 513
Bsp1286I GDGCHC 1 cut(s) 608
Bsp13I TCCGGA 1 cut(s) 176
BspACI CCGC 6 cut(s) 139, 247, 366, 596, 599, 644
BspCNI CTCAG 1 cut(s) 372
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 4 cut(s) 184, 236, 288, 366
BspLI GGNNCC 4 cut(s) 321, 484, 501, 502
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 6 cut(s) 187, 349, 477, 477, 490, 580
BsrFI RCCGGY 2 cut(s) 492, 619
BssAI RCCGGY 2 cut(s) 492, 619
BssECI CCNNGG 1 cut(s) 323
BssHII GCGCGC 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 517, 641
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 236, 621
BstDEI CTNAG 2 cut(s) 359, 633
BstF5I GGATG 2 cut(s) 312, 562
BstFNI CGCG 4 cut(s) 184, 236, 288, 366
BstHHI GCGC 4 cut(s) 186, 236, 238, 366
BstMAI GTCTC 3 cut(s) 246, 506, 680
BstMCI CGRYCG 3 cut(s) 267, 292, 304
BstMWI GCNNNNNNNGC 5 cut(s) 231, 566, 587, 629, 667
BstSCI CCNGG 2 cut(s) 322, 507
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 4 cut(s) 184, 236, 288, 366
BstV1I GCAGC 2 cut(s) 654, 657
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 3 cut(s) 354, 469, 482
BstYI RGATCY 3 cut(s) 354, 469, 482
Bsu36I CCTNAGG 1 cut(s) 359
BtsCI GGATG 2 cut(s) 312, 562
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 236, 621
CfoI GCGC 4 cut(s) 186, 236, 238, 366
Cfr10I RCCGGY 2 cut(s) 492, 619
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 662
Csp6I GTAC 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 492
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 359, 633
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 2 cut(s) 128, 585
Ecl136II GAGCTC 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 606
Eco81I CCTNAGG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 608
Esp3I CGTCTC 2 cut(s) 506, 680
FaiI YATR 4 cut(s) 8, 12, 14, 588
FaqI GGGAC 2 cut(s) 109, 513
Fnu4HI GCNGC 6 cut(s) 247, 367, 599, 645, 668, 671
FokI GGATG 2 cut(s) 319, 569
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 6 cut(s) 247, 367, 599, 645, 668, 671
FspBI CTAG 1 cut(s) 152
GlaI GCGC 4 cut(s) 185, 235, 237, 365
GluI GCNGC 6 cut(s) 247, 367, 599, 645, 668, 671
HapII CCGG 9 cut(s) 177, 222, 250, 263, 323, 383, 493, 509, 620
HgaI GACGC 1 cut(s) 662
HhaI GCGC 4 cut(s) 186, 236, 238, 366
Hin6I GCGC 4 cut(s) 184, 234, 236, 364
HinP1I GCGC 4 cut(s) 184, 234, 236, 364
HinfI GANTC 4 cut(s) 103, 259, 379, 464
HpaII CCGG 9 cut(s) 177, 222, 250, 263, 323, 383, 493, 509, 620
HphI GGTGA 3 cut(s) 349, 361, 562
Hpy188I TCNGA 6 cut(s) 110, 306, 410, 432, 463, 469
Hpy188III TCNNGA 4 cut(s) 128, 177, 576, 677
Hpy99I CGWCG 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 427, 657
HpyCH4III ACNGT 2 cut(s) 517, 641
HpyCH4V TGCA 2 cut(s) 520, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 566, 587, 629, 667
HpyF3I CTNAG 2 cut(s) 359, 633
HspAI GCGC 4 cut(s) 184, 234, 236, 364
KflI GGGWCCC 1 cut(s) 500
Kpn2I TCCGGA 1 cut(s) 176
KroI GCCGGC 1 cut(s) 619
KroNI GCCGGC 1 cut(s) 621
LmnI GCTCC 3 cut(s) 179, 578, 611
Lsp1109I GCAGC 2 cut(s) 654, 657
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 152
MboII GAAGA 5 cut(s) 116, 265, 340, 364, 404
MflI RGATCY 3 cut(s) 354, 469, 482
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 2 cut(s) 69, 196
MlyI GAGTC 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 5 cut(s) 249, 364, 368, 432, 436
MroI TCCGGA 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 619
MspI CCGG 9 cut(s) 177, 222, 250, 263, 323, 383, 493, 509, 620
MspR9I CCNGG 2 cut(s) 324, 509
MvnI CGCG 4 cut(s) 184, 236, 288, 366
MwoI GCNNNNNNNGC 5 cut(s) 231, 566, 587, 629, 667
NaeI GCCGGC 1 cut(s) 621
NciI CCSGG 2 cut(s) 324, 509
NgoMIV GCCGGC 1 cut(s) 619
NlaIV GGNNCC 4 cut(s) 321, 484, 501, 502
NmeAIII GCCGAG 1 cut(s) 627
PaqCI CACCTGC 1 cut(s) 337
PauI GCGCGC 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 621
PfeI GAWTC 3 cut(s) 103, 379, 464
PinAI ACCGGT 1 cut(s) 492
PkrI GCNGC 6 cut(s) 248, 368, 600, 646, 669, 672
Ple19I CGATCG 2 cut(s) 292, 304
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 608
Psp5II RGGWCCY 1 cut(s) 500
PspN4I GGNNCC 4 cut(s) 321, 484, 501, 502
PspPI GGNCC 1 cut(s) 500
PspPPI RGGWCCY 1 cut(s) 500
PsuI RGATCY 3 cut(s) 354, 469, 482
PteI GCGCGC 1 cut(s) 234
PvuI CGATCG 2 cut(s) 292, 304
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SacI GAGCTC 1 cut(s) 608
SatI GCNGC 6 cut(s) 247, 367, 599, 645, 668, 671
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 324, 509
SduI GDGCHC 1 cut(s) 608
SetI ASST 8 cut(s) 82, 164, 321, 351, 537, 552, 583, 608
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 500
Sse9I AATT 2 cut(s) 69, 196
SsiI CCGC 6 cut(s) 139, 247, 366, 596, 599, 644
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 608
StyD4I CCNGG 2 cut(s) 322, 507
TaaI ACNGT 2 cut(s) 517, 641
TaqI TCGA 2 cut(s) 127, 678
TasI AATT 2 cut(s) 69, 196
TauI GCSGC 4 cut(s) 249, 369, 601, 647
TfiI GAWTC 3 cut(s) 103, 379, 464
TseI GCWGC 2 cut(s) 667, 670
TspGWI ACGGA 3 cut(s) 404, 598, 603
VpaK11BI GGWCC 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.