RchiOBHm_Chr2g0092411
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002896
Physical Location & Seq
Forward (+)
5935439 .. 5936630
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 945 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCCGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTACCAACCAAAGCAGGCCTGAATCGTTGCGGTAAGAGTTGTCGTTTGAGATGGCTGAACTATCTTAGGCCAGACATCAAGCGTGGTACTTTCACGGAGGAAGAAGACAATGTTATCTGCACTCTCTTTAGAAGCATTGGAAGCAGGCAAGTGAATGACTATGGCACTCATATATGGTACCAGTACTACAGATTTTGCTATAATGTTGTTCTGCTTGGGTGTCCTTCACAAGAGTTGATCATTTATGTTTCTCTGTGTTTTGGGATTAGGTGGTCTGTCATAGCTTCTCAACTGCCAGGACGAACAGATAATGATGTGAAAAACTATTGGAACACAAAGTTGAAGAAAAAGCTGCTGGCGGTTGCTGCAAGAAATAACATTGTGGCTACTAGACAGACATGTGATCACAACATTGCTGATCAGTTTTCAGCTCCAGTTCCTCCCAAAATCGAAACCCCTCATGGCCCCGAGACTTCATCTTGTTTAGGTGGCACATTACCATATGCAGCGAACATAAGTTTGGTGCATAGTTTTGATCAACCAAAGGAAACTTTTGAACCCTGGTGCAATCATTCTGATTCAAAGCCTATGGAAGTTTCTGATTTTGGCAGCACTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATCAGGAAGTTTCAAGTCTTCCCAGTTCTTCCAGTTTGGCTCAGCTGGATCAGTACCATTGCTCCTTGTGGTCTGGACATGAAGGTATCAATTACGTTAACAGCGAGTTCCTTATGGACTTCGGATTCGAAACTCCTCCTGCTGATCAGTTTCTTCTGGGTGGCTATGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.32

Weight (kDa)

6.41

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.4e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 128 - 152 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 2 cut(s) 98, 297
AciI CCGC 2 cut(s) 150, 479
AclWI GGATC 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 4 cut(s) 208, 299, 305, 824
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 4 cut(s) 463, 677, 702, 783
AhlI ACTAGT 1 cut(s) 734
AjnI CCWGG 2 cut(s) 415, 680
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 5 cut(s) 11, 404, 472, 551, 814
AluI AGCT 5 cut(s) 11, 404, 472, 551, 814
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 57, 584
AlwI GGATC 1 cut(s) 825
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 3 cut(s) 136, 188, 583
ApeKI GCWGC 4 cut(s) 472, 485, 626, 729
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp718I GGTACC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 44, 584
AsuII TTCGAA 1 cut(s) 897
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 2 cut(s) 98, 297
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 3 cut(s) 69, 231, 779
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 459, 472, 638, 741
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 417, 682
BclI TGATCA 5 cut(s) 357, 523, 538, 655, 913
BcoDI GTCTC 2 cut(s) 57, 584
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 2 cut(s) 510, 735
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 4 cut(s) 473, 486, 627, 730
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 4 cut(s) 474, 487, 628, 731
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 417, 682
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 44, 584
BmiI GGNNCC 3 cut(s) 100, 299, 586
BmrFI CCNGG 2 cut(s) 417, 682
BmrI ACTGGG 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 786
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 69, 231, 779
BpmI CTGGAG 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 680
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bse1I ACTGG 5 cut(s) 109, 301, 554, 792, 801
Bse3DI GCAATG 2 cut(s) 531, 826
BseBI CCWGG 2 cut(s) 417, 682
BseDI CCNNGG 2 cut(s) 47, 680
BseMI GCAATG 2 cut(s) 531, 826
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 5 cut(s) 109, 301, 554, 792, 801
BseRI GAGGAG 1 cut(s) 894
BseXI GCAGC 4 cut(s) 459, 472, 638, 741
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 138, 190, 585
BshNI GGYRCC 2 cut(s) 98, 297
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 587
BsmAI GTCTC 2 cut(s) 57, 584
BsnI GGCC 3 cut(s) 138, 190, 585
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 897
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 6 cut(s) 357, 523, 538, 655, 817, 913
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 150, 479
BspANI GGCC 3 cut(s) 138, 190, 585
BspCNI CTCAG 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 100, 299, 586
BspPI GGATC 1 cut(s) 825
BspT104I TTCGAA 1 cut(s) 897
BspT107I GGYRCC 2 cut(s) 98, 297
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 531, 826
BsrI ACTGG 5 cut(s) 109, 301, 554, 792, 801
BssECI CCNNGG 2 cut(s) 47, 680
BssMI GATC 6 cut(s) 357, 523, 538, 655, 817, 913
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 417, 682
Bst4CI ACNGT 1 cut(s) 749
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 897
BstC8I GCNNGC 3 cut(s) 136, 266, 477
BstDEI CTNAG 2 cut(s) 185, 810
BstDSI CCRYGG 1 cut(s) 47
BstKTI GATC 6 cut(s) 360, 526, 541, 658, 820, 916
BstMAI GTCTC 2 cut(s) 57, 584
BstMBI GATC 6 cut(s) 357, 523, 538, 655, 817, 913
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 485
BstNI CCWGG 2 cut(s) 417, 682
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 415, 680
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 4 cut(s) 459, 472, 638, 741
BstV2I GAAGAC 3 cut(s) 69, 231, 779
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 3 cut(s) 138, 190, 585
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 136, 266, 477
Cfr13I GGNCC 2 cut(s) 44, 584
CseI GACGC 1 cut(s) 74
Csp6I GTAC 4 cut(s) 207, 298, 304, 823
CviAII CATG 6 cut(s) 15, 48, 95, 519, 581, 848
CviQI GTAC 4 cut(s) 207, 298, 304, 823
DdeI CTNAG 2 cut(s) 185, 810
DpnI GATC 6 cut(s) 359, 525, 540, 657, 819, 915
DpnII GATC 6 cut(s) 357, 523, 538, 655, 817, 913
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 415, 680
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 18, 51, 98, 522, 584, 851
FatI CATG 6 cut(s) 14, 47, 94, 518, 580, 847
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 5 cut(s) 357, 523, 538, 655, 913
Fnu4HI GCNGC 4 cut(s) 473, 486, 627, 730
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 4 cut(s) 473, 486, 627, 730
FspBI CTAG 2 cut(s) 510, 735
GluI GCNGC 4 cut(s) 473, 486, 627, 730
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 3 cut(s) 138, 190, 585
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 6 cut(s) 18, 51, 98, 522, 584, 851
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 3 cut(s) 142, 698, 894
HpaI GTTAAC 1 cut(s) 868
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 3 cut(s) 697, 721, 893
Hpy188III TCNNGA 4 cut(s) 56, 76, 773, 843
Hpy8I GTNNAC 1 cut(s) 868
HpyAV CCTTC 2 cut(s) 354, 845
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 5 cut(s) 240, 488, 626, 646, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 485
HpyF3I CTNAG 2 cut(s) 185, 810
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 6 cut(s) 18, 51, 98, 522, 584, 851
KpnI GGTACC 1 cut(s) 301
Ksp22I TGATCA 5 cut(s) 357, 523, 538, 655, 913
KspAI GTTAAC 1 cut(s) 868
Kzo9I GATC 6 cut(s) 357, 523, 538, 655, 817, 913
LmnI GCTCC 3 cut(s) 16, 556, 836
Lsp1109I GCAGC 4 cut(s) 459, 472, 638, 741
MaeI CTAG 2 cut(s) 510, 735
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 2 cut(s) 20, 743
MalI GATC 6 cut(s) 359, 525, 540, 657, 819, 915
MboI GATC 6 cut(s) 357, 523, 538, 655, 817, 913
MboII GAAGA 9 cut(s) 18, 71, 74, 233, 236, 475, 779, 789, 914
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 859
MnlI CCTC 7 cut(s) 35, 83, 95, 211, 570, 588, 915
MseI TTAA 1 cut(s) 867
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 814
MspR9I CCNGG 2 cut(s) 417, 682
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 417, 682
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 485
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 622
NdeII GATC 6 cut(s) 357, 523, 538, 655, 817, 913
NlaIII CATG 6 cut(s) 18, 51, 98, 522, 584, 851
NlaIV GGNNCC 3 cut(s) 100, 299, 586
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 522
NspV TTCGAA 1 cut(s) 897
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 870
PfeI GAWTC 3 cut(s) 142, 698, 894
PkrI GCNGC 4 cut(s) 474, 487, 628, 731
PscI ACATGT 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 415, 680
PspGI CCWGG 2 cut(s) 415, 680
PspN4I GGNNCC 3 cut(s) 100, 299, 586
PspPI GGNCC 2 cut(s) 44, 584
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 4 cut(s) 208, 299, 305, 824
RsaNI GTAC 4 cut(s) 207, 298, 304, 823
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 867
SatI GCNGC 4 cut(s) 473, 486, 627, 730
Sau3AI GATC 6 cut(s) 357, 523, 538, 655, 817, 913
Sau96I GGNCC 2 cut(s) 44, 584
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 417, 682
SduI GDGCHC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 897
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 2 cut(s) 109, 859
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 2 cut(s) 150, 479
SspMI CTAG 2 cut(s) 510, 735
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 415, 680
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 1 cut(s) 867
TaqI TCGA 2 cut(s) 570, 897
TasI AATT 2 cut(s) 109, 859
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 3 cut(s) 142, 698, 894
Tru1I TTAA 1 cut(s) 867
Tru9I TTAA 1 cut(s) 867
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 472, 485, 626, 729
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 585, 864
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 522
XspI CTAG 2 cut(s) 510, 735
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.