RchiOBHm_Chr2g0138451

Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004879
Physical Location & Seq
Reverse (-)
56142046 .. 56143010
965 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGGCTCCGGTCACCGGAAGTTCGATTCACCGGTCGGGCTCTCGGCCTCAGTTAGACCTCAGCAAAGCTGCTATTCAGGGAACTTTTGAAGAGAGGGACCATACAATTCTGTTGCCTAATCAGTCTGATCACTTGTCTCATCTGGCTTTGGACATTGGAGGTATAACTGATCAATTCAATTGTGCTTTTGTCGATTGTGTTTTTGGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACGCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGCTTCATTTATTCTAAACAACTTCACCGTGGAGGGATGGATGTTCGTATTTGGAATCCTGATGCCCCAACCAATGAAAATGCTGTAA

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

8.49

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fumble PF03630 69 - 131 3.4e-07 Fumble
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 14
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 89, 178, 280
AluBI AGCT 3 cut(s) 68, 318, 386
AluI AGCT 3 cut(s) 68, 318, 386
Alw26I GTCTC 3 cut(s) 141, 280, 353
AlwI GGATC 1 cut(s) 214
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 68
AseI ATTAAT 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 4, 20, 400
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 414
BclI TGATCA 2 cut(s) 127, 169
BcoDI GTCTC 3 cut(s) 141, 280, 353
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 6, 98
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 3 cut(s) 7, 14, 30
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 425, 429
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 62, 73
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 8, 15, 31
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 3 cut(s) 141, 280, 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 127, 169, 206
Bsp1720I GCTNAGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 61, 72
BspLI GGNNCC 2 cut(s) 6, 98
BspPI GGATC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 127, 169, 206
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 48, 59, 382
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 425, 429
BstKTI GATC 3 cut(s) 130, 172, 209
BstMAI GTCTC 3 cut(s) 141, 280, 353
BstMBI GATC 3 cut(s) 127, 169, 206
BstMCI CGRYCG 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 425, 429
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 97
CspAI ACCGGT 1 cut(s) 30
CviJI RGCY 8 cut(s) 5, 39, 46, 68, 146, 318, 340, 386
CviKI_1 RGCY 8 cut(s) 5, 39, 46, 68, 146, 318, 340, 386
DdeI CTNAG 3 cut(s) 48, 59, 382
DpnI GATC 3 cut(s) 129, 171, 208
DpnII GATC 3 cut(s) 127, 169, 206
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 353
FaiI YATR 2 cut(s) 102, 164
FaqI GGGAC 1 cut(s) 110
FbaI TGATCA 2 cut(s) 127, 169
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 432, 436
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 46
HapII CCGG 3 cut(s) 8, 15, 31
HinfI GANTC 2 cut(s) 25, 438
HpaII CCGG 3 cut(s) 8, 15, 31
HphI GGTGA 3 cut(s) 4, 20, 400
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 234, 442
HpyAV CCTTC 2 cut(s) 274, 330
HpyCH4III ACNGT 1 cut(s) 412
HpyF3I CTNAG 3 cut(s) 48, 59, 382
Ksp22I TGATCA 2 cut(s) 127, 169
Kzo9I GATC 3 cut(s) 127, 169, 206
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 21, 28, 44, 62, 128, 275, 455
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 129, 171, 208
MboI GATC 3 cut(s) 127, 169, 206
MboII GAAGA 4 cut(s) 101, 254, 280, 324
MfeI CAATTG 2 cut(s) 178, 252
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 4 cut(s) 105, 173, 178, 252
MnlI CCTC 5 cut(s) 57, 68, 87, 152, 409
MseI TTAA 1 cut(s) 372
MspI CCGG 3 cut(s) 8, 15, 31
MunI CAATTG 2 cut(s) 178, 252
NdeII GATC 3 cut(s) 127, 169, 206
NlaIV GGNNCC 2 cut(s) 6, 98
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 25, 438
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 6, 98
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 206
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 127, 169, 206
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 41
SetI ASST 5 cut(s) 60, 70, 163, 320, 388
SfaNI GCATC 1 cut(s) 435
SinI GGWCC 1 cut(s) 97
Sse9I AATT 4 cut(s) 105, 173, 178, 252
SspMI CTAG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 23, 192, 310
TasI AATT 4 cut(s) 105, 173, 178, 252
TfiI GAWTC 2 cut(s) 25, 438
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 332, 378
VpaK11BI GGWCC 1 cut(s) 97
VspI ATTAAT 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 233
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.