Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Reverse (-)

65593293 .. 65594216

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTCAAGAGCTATTGCATGTTGCATTCTGTTGTCATTGTTCTCAGTAGCTTTAGCTGAATATGTCGATGTCAGGGTTCGAGGAGTGGATTTGAAGAACAAGACCTTGATCAATGCAGTAAAGGCATTCAATACAATAAGGATCAGAATTGGAGGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCGTGAAAGATGGTTCTGGGCCTTTCTTGTTCCGTGGCGGTTGTCTTCAGCCGAAAAGATGGGATGAGATCTATGAGTTCTTCAACCAAACACAAGCCAAACTCTTGTTTGGATTGAATGCCCTTCATGGGAAGAAAGCGGACCCTAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAATGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGAGTCATATGAGCTTGGAAACAAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

8.94

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	29 - 170	6.4e-52	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AciI	CCGC	2 cut(s)	255, 356
AclWI	GGATC	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	97, 133, 301, 334
AluBI	AGCT	5 cut(s)	14, 53, 59, 463, 509
AluI	AGCT	5 cut(s)	14, 53, 59, 463, 509
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	236, 358
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	3 cut(s)	221, 270, 437
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BclI	TGATCA	1 cut(s)	111
BglII	AGATCT	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	236, 358
BmiI	GGNNCC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	3 cut(s)	27, 128, 340
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	111, 144, 285, 412
BspACI	CCGC	2 cut(s)	255, 356
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	111, 144, 285, 412
BssSI	CACGAG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	4 cut(s)	114, 147, 288, 415
BstMBI	GATC	4 cut(s)	111, 144, 285, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 404
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	236, 358
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	3 cut(s)	21, 344, 418
CviJI	RGCY	8 cut(s)	14, 53, 59, 238, 268, 314, 463, 509
CviKI_1	RGCY	8 cut(s)	14, 53, 59, 238, 268, 314, 463, 509
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	4 cut(s)	113, 146, 287, 414
DpnII	GATC	4 cut(s)	111, 144, 285, 412
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
FaeI	CATG	3 cut(s)	24, 347, 421
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	20, 343, 417
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	111
FokI	GGATG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	24, 347, 421
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	2 cut(s)	373, 452
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	3 cut(s)	9, 220, 410
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	20, 27, 119, 166, 210, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 404
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	3 cut(s)	24, 347, 421
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	111, 144, 285, 412
LpnPI	CCDG	3 cut(s)	61, 219, 459
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	4 cut(s)	113, 146, 287, 414
MboI	GATC	4 cut(s)	111, 144, 285, 412
MboII	GAAGA	4 cut(s)	109, 254, 289, 361
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	3 cut(s)	150, 174, 184
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	2 cut(s)	77, 149
MseI	TTAA	1 cut(s)	511
Mva1269I	GAATGC	3 cut(s)	27, 128, 340
MwoI	GCNNNNNNNGC	2 cut(s)	125, 404
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	111, 144, 285, 412
NlaIII	CATG	3 cut(s)	24, 347, 421
NlaIV	GGNNCC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	24
PctI	GAATGC	3 cut(s)	27, 128, 340
PfeI	GAWTC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	236, 358
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	511
Sau3AI	GATC	4 cut(s)	111, 144, 285, 412
Sau96I	GGNCC	2 cut(s)	236, 358
SchI	GAGTC	1 cut(s)	461
SetI	ASST	8 cut(s)	16, 55, 61, 110, 160, 465, 496, 511
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	150, 174, 184
SsiI	CCGC	2 cut(s)	255, 356
TaqI	TCGA	2 cut(s)	69, 82
TasI	AATT	3 cut(s)	150, 174, 184
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	150, 332
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	358
XceI	RCATGY	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.