Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8288403.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8288403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

aagacatgaaaaagctcaaacaacttgtgacagagttgttcccagatggtaaacagccaaaggttttaggccccggcggcttttatgagaaaaagtggttcaatgacttcctgcaggccaccggacccggtgtcctagacggtgtgactcatcacacttacgaccttggtgctggtgttgatccaacccttataaccaaggttcaagacccattttacctggaccattcatctcagacatataatgatgtggcagactcagttaaacagtttgccccatggacagacccgtgggttggtgaggctggtggagcttacaacagtggtggcaaagatgtttcacatacctttgctaatggcttttggtacttaatcacaaccctaaattttgttctgtcttcaaaacttagcgcgcaaacggttagtgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

5.4

Isoelectric Point (pI)

22.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	193
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	384
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	102, 205, 401
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	15, 313
AluI	AGCT	2 cut(s)	15, 313
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	69, 116
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	412, 414
AspS9I	GGNCC	3 cut(s)	70, 124, 222
AsuC2I	CCSGG	2 cut(s)	74, 128
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	124, 222
BbsI	GAAGAC	1 cut(s)	389
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	74, 128
BfaI	CTAG	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	74, 128, 220
Bme18I	GGWCC	2 cut(s)	124, 222
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	70, 124, 222
BmiI	GGNNCC	2 cut(s)	72, 126
BmrFI	CCNGG	3 cut(s)	74, 128, 220
BpiI	GAAGAC	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	74, 128
BsaJI	CCNNGG	5 cut(s)	72, 165, 197, 277, 289
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	5 cut(s)	72, 165, 197, 277, 289
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	247, 272
BsePI	GCGCGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	2 cut(s)	71, 118
BsiSI	CCGG	3 cut(s)	74, 122, 128
BslI	CCNNNNNNNGG	1 cut(s)	295
BsnI	GGCC	2 cut(s)	71, 118
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	71, 118
BspCNI	CTCAG	2 cut(s)	246, 271
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	72, 126
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	175
BssECI	CCNNGG	5 cut(s)	72, 165, 197, 277, 289
BssHII	GCGCGC	1 cut(s)	410
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	3 cut(s)	165, 197, 277
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	142, 269, 322, 420
BstC8I	GCNNGC	2 cut(s)	116, 412
BstDEI	CTNAG	3 cut(s)	233, 258, 406
BstDSI	CCRYGG	2 cut(s)	277, 289
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	412, 414
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 310
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	72, 126, 218
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	71, 118
BtgI	CCRYGG	2 cut(s)	277, 289
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	116, 412
CfoI	GCGC	2 cut(s)	412, 414
Cfr13I	GGNCC	3 cut(s)	70, 124, 222
Csp6I	GTAC	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	2 cut(s)	6, 278
CviJI	RGCY	8 cut(s)	15, 57, 71, 80, 118, 304, 313, 359
CviKI_1	RGCY	8 cut(s)	15, 57, 71, 80, 118, 304, 313, 359
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	3 cut(s)	233, 258, 406
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	165, 197, 277
Eco47I	GGWCC	2 cut(s)	124, 222
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	3 cut(s)	165, 197, 277
ErhI	CCWWGG	3 cut(s)	165, 197, 277
FaeI	CATG	2 cut(s)	9, 281
FaiI	YATR	7 cut(s)	7, 86, 193, 240, 242, 279, 344
FatI	CATG	2 cut(s)	5, 277
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	136
GlaI	GCGC	2 cut(s)	411, 413
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	71, 118
HapII	CCGG	3 cut(s)	74, 122, 128
HhaI	GCGC	2 cut(s)	412, 414
Hin1II	CATG	2 cut(s)	9, 281
Hin6I	GCGC	2 cut(s)	410, 412
HinP1I	GCGC	2 cut(s)	410, 412
HinfI	GANTC	2 cut(s)	147, 256
HpaII	CCGG	3 cut(s)	74, 122, 128
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	4 cut(s)	142, 269, 322, 420
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 310
HpyF3I	CTNAG	3 cut(s)	233, 258, 406
Hsp92II	CATG	2 cut(s)	9, 281
HspAI	GCGC	2 cut(s)	410, 412
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	27, 144
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	389
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	141, 250
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	263, 370
MspI	CCGG	3 cut(s)	74, 122, 128
MspR9I	CCNGG	3 cut(s)	74, 128, 220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	77, 310
NciI	CCSGG	2 cut(s)	74, 128
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	9, 281
NlaIV	GGNNCC	2 cut(s)	72, 126
NmuCI	GTSAC	2 cut(s)	27, 144
PauI	GCGCGC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	141, 250
PpsI	GAGTC	2 cut(s)	141, 250
PsiI	TTATAA	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	72, 126
PspPI	GGNCC	3 cut(s)	70, 124, 222
PstI	CTGCAG	1 cut(s)	116
PteI	GCGCGC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	263, 370
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	70, 124, 222
SbfI	CCTGCAGG	1 cut(s)	116
SchI	GAGTC	2 cut(s)	141, 250
ScrFI	CCNGG	3 cut(s)	74, 128, 220
SdaI	CCTGCAGG	1 cut(s)	116
SetI	ASST	7 cut(s)	17, 65, 167, 203, 221, 315, 349
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	124, 222
Sse8387I	CCTGCAGG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	72, 126, 218
StyI	CCWWGG	3 cut(s)	165, 197, 277
TaaI	ACNGT	4 cut(s)	142, 269, 322, 420
TasI	AATT	1 cut(s)	384
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	263, 370
Tru9I	TTAA	2 cut(s)	263, 370
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	2 cut(s)	27, 144
Tsp45I	GTSAC	2 cut(s)	27, 144
TspDTI	ATGAA	2 cut(s)	22, 218
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	124, 222
XapI	RAATTY	1 cut(s)	384
XspI	CTAG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.