Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002505.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

26933 .. 27721

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002505.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggggtcgagagctattgcatgttgcattctgttgtcattgttctcagtagctttagctgaatatgtcgatgtcagggttcaaggagtggtttcgatagctagcacagatgacaatttcatatgtgcaaccctggattggtggccaactgataaatgtgattacaatcaatgtccttggggaaaagctggaatttttaatctggatttgaagaacaagaccttgatcaatgcagtaaaggcattcaatacaataaggatcagaattggaggttcattgcaagaccaaattatttataattttggttatggagtgaaagactgcaaccaaatcgtgaaagatggttctgggcctttcttgttccgtggcggttgtcttcagccgaaaagatgggatgagatccatgaattcttcaaccaaacacaagccaaactcttgtttggattgaatgcccttcatgggaagaaaacggacccgaaagacaagattctttgggttggtgattgggacgcaaaaaacgctcgtgatctcatggagtacaccatctcaaagggttaccctgttgagtcatatgagcttggtatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

6.71

Isoelectric Point (pI)

22.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	266, 394
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	192, 407
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	138, 459
AgsI	TTSAA	5 cut(s)	83, 211, 247, 415, 448
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	6 cut(s)	14, 53, 59, 101, 188, 577
AluI	AGCT	6 cut(s)	14, 53, 59, 101, 188, 577
AlwI	GGATC	2 cut(s)	266, 394
AoxI	GGCC	2 cut(s)	143, 350
ApoI	RAATTY	2 cut(s)	192, 407
AspS9I	GGNCC	2 cut(s)	350, 472
AsuHPI	GGTGA	1 cut(s)	512
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	145
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	368
BccI	CCATC	3 cut(s)	335, 384, 551
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	225
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	350, 472
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	132, 176, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 459
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	132, 176, 364
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	138, 459
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	145, 352
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	138, 459
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	3 cut(s)	27, 242, 454
BsnI	GGCC	2 cut(s)	145, 352
Bsp143I	GATC	4 cut(s)	225, 258, 399, 526
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	145, 352
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	474
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	266, 394
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	132, 176, 364
BssMI	GATC	4 cut(s)	225, 258, 399, 526
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	364
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	228, 261, 402, 529
BstMBI	GATC	4 cut(s)	225, 258, 399, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 518
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	145, 352
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	350, 472
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	4 cut(s)	21, 404, 458, 532
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	4 cut(s)	227, 260, 401, 528
DpnII	GATC	4 cut(s)	225, 258, 399, 526
EaeI	YGGCCR	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	4 cut(s)	24, 407, 461, 535
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	4 cut(s)	20, 403, 457, 531
FauNDI	CATATG	2 cut(s)	122, 571
FbaI	TGATCA	1 cut(s)	225
FokI	GGATG	1 cut(s)	407
FspBI	CTAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	145, 352
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	4 cut(s)	24, 407, 461, 535
HinfI	GANTC	2 cut(s)	487, 566
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	4 cut(s)	9, 203, 334, 524
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	1 cut(s)	464
HpyCH4V	TGCA	6 cut(s)	20, 27, 128, 233, 280, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 518
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	4 cut(s)	24, 407, 461, 535
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	225, 258, 399, 526
LpnPI	CCDG	7 cut(s)	61, 119, 146, 174, 188, 333, 573
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	4 cut(s)	227, 260, 401, 528
MboI	GATC	4 cut(s)	225, 258, 399, 526
MboII	GAAGA	4 cut(s)	223, 368, 403, 475
MflI	RGATCY	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	6 cut(s)	115, 192, 264, 288, 298, 407
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	1 cut(s)	263
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	3 cut(s)	27, 242, 454
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	239, 518
NdeI	CATATG	2 cut(s)	122, 571
NdeII	GATC	4 cut(s)	225, 258, 399, 526
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	24, 407, 461, 535
NlaIV	GGNNCC	1 cut(s)	474
NspI	RCATGY	1 cut(s)	24
PctI	GAATGC	3 cut(s)	27, 242, 454
PfeI	GAWTC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PsiI	TTATAA	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	2 cut(s)	350, 472
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	4 cut(s)	225, 258, 399, 526
Sau96I	GGNCC	2 cut(s)	350, 472
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	8 cut(s)	16, 55, 61, 103, 190, 224, 274, 579
SinI	GGWCC	1 cut(s)	472
Sse9I	AATT	6 cut(s)	115, 192, 264, 288, 298, 407
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	3 cut(s)	8, 69, 95
TasI	AATT	6 cut(s)	115, 192, 264, 288, 298, 407
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	4 cut(s)	109, 264, 420, 446
TspGWI	ACGGA	2 cut(s)	353, 485
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	2 cut(s)	192, 407
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.