Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425743.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Reverse (-)

1019 .. 1333

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425743.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtccaactctactaccttcgatgttgaagttttccccgagttcaatctgcatccttggcaaagatatgaggaacaatcggacacaaaatcagctggtgcaccaatgagagaagagtatcatttgacaccagaaggtggcaatatccaaagtgatgtgttgctactgaatgggactccattgaagctcacagagtcatccgacattcctgaactgcaaccaaaactagtggatcctacctctgcagtcagtgttgcaccacagtcattcgtctttgtatctatcaaggacttccatgcccctgcatgcgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

4.48

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AclWI	GGATC	2 cut(s)	227, 240
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	29, 46, 184
AhlI	ACTAGT	1 cut(s)	226
AluBI	AGCT	2 cut(s)	95, 187
AluI	AGCT	2 cut(s)	95, 187
Alw21I	GWGCWC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	227, 240
Ama87I	CYCGRG	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	103
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	52, 197
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	227, 240
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	52, 197
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	52, 197
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	311
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	2 cut(s)	296, 306
CviJI	RGCY	2 cut(s)	95, 187
CviKI_1	RGCY	2 cut(s)	95, 187
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	299, 309
FaiI	YATR	3 cut(s)	69, 297, 307
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	295, 305
FokI	GGATG	2 cut(s)	39, 184
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	299, 309
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	175, 194
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	82, 202
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	28, 128
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	52, 101, 217, 245, 257, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	299, 309
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	81, 144, 222
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	227
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	169, 203
MmeI	TCCRAC	2 cut(s)	30, 225
MnlI	CCTC	2 cut(s)	64, 250
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	299, 309
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	137
PleI	GAGTC	2 cut(s)	169, 202
PpsI	GAGTC	2 cut(s)	169, 202
PspN4I	GGNNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	2 cut(s)	169, 203
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	20, 97, 139, 189, 242
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	243
SgeI	CNNG	9 cut(s)	50, 52, 69, 108, 143, 221, 239, 298, 308
SpeI	ACTAGT	1 cut(s)	226
SphI	GCATGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	256
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.