Rw0G016750

heparanase-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
Physical Location & Seq
Forward (+)
492021 .. 494279
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016750.1

Sequence Viewer

Length: 1515 bp
ATGGGGTCGAGAGCTATTGCATGTTGCATTCTGTTGTCATTGTTCTCAGTAGCTTTAGCTGAATATGTCGATGTCAGGGTTCGAGGAGTGGTTTCGATAGCTAGCACAGATGACAATTTCATATGTGCAACCCTGGATTGGTGGCCAACTGATAAATGTGATTACAATCAATGTCCTTGGGGAAAAGCTGGAATTTTTAATCTGGATTTGAAGAACAAGACCTTGATCAATGCAGTAAAGGCATTCAATACAATAAGGATCAGAATTGGAGGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCGTGAAAGATGGTTCTGGGCCTTTCTTGTTCAGTGGCGGTTCCAAACTCTTGTTTGGATTGAATGCCCTTCATGGGAAGAAAACGGACCCGAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAACGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGAGTCATATGAGCTTGGAAACGAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTGAACAATATGCCAAAGACATGAAAAAGCTCAAACAACTTGTGACAGAGTTGTTCCCAGATGGTAAACAGCCAAAGGTTTTAGGCCCCGGCGGCTTTTATGAGAAAAAGTGGTTCAATGACTTCCTGCAGGCCACCGGACCCGGTGTCCTAGACGGTGTGACTCATCACACTTACGACCTTGGTGCTGGTGTTGATCCAACCCTTATAACCAAGGTTCAAGACCCATTTTACCTGGACCATTCATCTCAGACATATAATGATGTGGCAAACTCAGTTAAACAGTTTGCCCCATGGACAGACCCTTGGGTTGGTGAGGCTGGTGGAGCTTACAACAGTGGTGGCAAAGATGTTTCACATACCTTTGCTAACGGCTTTTGGTATTTGGACCAACTTGGTATGACAGCAAGCTACAGTCACAAGGTTTACTGCAGACAAGCCTTGATTGGAGGGAACTATGCCCTACTTAATACCACATCTTTCATCCCTAATCCTGACTACTATGGTGCACTCCTATGGCATAGACTGATGGGAAATAAAGTGCTCTCTACCGTTCATTATGGCTCTCCCTTCTTGCGTGCATATACTCATTGTTCAAAGAAAAAGCCTGGGGTCACTCTGCTTTTGATCAACATGTCCAACTCTACTACCTTCGATGTTGAAGTTTTCCCCGAGTTCAATCTGCATCCTTGGCAAAGATATGAGGACCAATCGGACACAAAATCAGCTGGTGCACCAATGAGAGAAGAGTATCATTTGACACCAGAAGGTGGCAATATCCAAAGTGATGTGTTGCTACTGAATGGGACTCCATTGAAGCTCACTGAGTCATCCGACATTCCTGAACTGCAACCAAAACTAGTGGATCCTACCTCTGCAGTCAGTGTTGCACCACAGTCATTCGTCTTTGTTTCTATCAAGGACTTCCATGCCCCTGCATGCGCTTAG

Protein Analysis

504

Amino Acids

55.65

Weight (kDa)

5.96

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 24 - 322 3.8e-124 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 297, 776
AccB7I CCANNNNNTGG 1 cut(s) 1337
AciI CCGC 2 cut(s) 369, 660
AclWI GGATC 4 cut(s) 266, 758, 1427, 1440
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 4 cut(s) 138, 405, 878, 1337
AflIII ACRYGT 1 cut(s) 1200
AgsI TTSAA 9 cut(s) 211, 247, 394, 685, 788, 1164, 1229, 1246, 1384
AhdI GACNNNNNGTC 1 cut(s) 713
AhlI ACTAGT 1 cut(s) 1426
AjnI CCWGG 3 cut(s) 132, 801, 1174
Alw21I GWGCWC 3 cut(s) 1078, 1113, 1303
Alw44I GTGCAC 2 cut(s) 1074, 1299
AlwI GGATC 4 cut(s) 266, 758, 1427, 1440
Ama87I CYCGRG 1 cut(s) 1238
AoxI GGCC 4 cut(s) 143, 350, 652, 699
ApaLI GTGCAC 2 cut(s) 1074, 1299
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 1 cut(s) 1511
AspS9I GGNCC 7 cut(s) 350, 418, 653, 707, 805, 955, 1273
AsuC2I CCSGG 2 cut(s) 657, 711
AsuHPI GGTGA 2 cut(s) 458, 893
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 1238
AvaII GGWCC 5 cut(s) 418, 707, 805, 955, 1273
BaeGI GKGCMC 2 cut(s) 1078, 1303
BalI TGGCCA 1 cut(s) 145
BamHI GGATCC 1 cut(s) 1432
BauI CACGAG 1 cut(s) 468
Bbv12I GWGCWC 3 cut(s) 1078, 1113, 1303
BccI CCATC 4 cut(s) 335, 497, 623, 1090
BceAI ACGGC 1 cut(s) 955
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 734, 768
BciT130I CCWGG 3 cut(s) 134, 803, 1176
BclI TGATCA 2 cut(s) 225, 1194
BcnI CCSGG 2 cut(s) 657, 711
BcuI ACTAGT 1 cut(s) 1426
BfaI CTAG 3 cut(s) 102, 719, 1427
BfmI CTRYAG 4 cut(s) 695, 979, 997, 1443
BglI GCCNNNNNGGC 1 cut(s) 660
BisI GCNGC 1 cut(s) 661
BlsI GCNGC 1 cut(s) 662
Bme1390I CCNGG 5 cut(s) 134, 657, 711, 803, 1176
Bme18I GGWCC 5 cut(s) 418, 707, 805, 955, 1273
BmeRI GACNNNNNGTC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 1238
BmgT120I GGNCC 7 cut(s) 350, 418, 653, 707, 805, 955, 1273
BmiI GGNNCC 5 cut(s) 373, 420, 655, 709, 1434
BmrFI CCNGG 5 cut(s) 134, 657, 711, 803, 1176
BmsI GCATC 1 cut(s) 1261
BmtI GCTAGC 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 657, 711
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 9 cut(s) 132, 176, 655, 748, 780, 860, 872, 1175, 1256
BsaWI WCCGGW 1 cut(s) 704
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 405, 878, 1337
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 3 cut(s) 134, 803, 1176
BseDI CCNNGG 9 cut(s) 132, 176, 655, 748, 780, 860, 872, 1175, 1256
BseGI GGATG 3 cut(s) 1050, 1252, 1397
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 4 cut(s) 138, 405, 878, 1337
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 4 cut(s) 60, 830, 855, 1383
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 2 cut(s) 1078, 1303
BshFI GGCC 4 cut(s) 145, 352, 654, 701
BsiHKAI GWGCWC 3 cut(s) 1078, 1113, 1303
BsiHKCI CYCGRG 1 cut(s) 1238
BsiSI CCGG 3 cut(s) 657, 705, 711
BslFI GGGAC 2 cut(s) 467, 1387
BslI CCNNNNNNNGG 4 cut(s) 138, 405, 878, 1337
BsmFI GGGAC 2 cut(s) 467, 1387
BsmI GAATGC 3 cut(s) 27, 242, 400
BsnI GGCC 4 cut(s) 145, 352, 654, 701
BsoBI CYCGRG 1 cut(s) 1238
Bsp1286I GDGCHC 3 cut(s) 1078, 1113, 1303
Bsp143I GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
Bsp19I CCATGG 1 cut(s) 860
BspACI CCGC 2 cut(s) 369, 660
BspANI GGCC 4 cut(s) 145, 352, 654, 701
BspCNI CTCAG 4 cut(s) 59, 829, 854, 1384
BspLI GGNNCC 5 cut(s) 373, 420, 655, 709, 1434
BspMAI CTGCAG 3 cut(s) 699, 1001, 1447
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 4 cut(s) 266, 758, 1427, 1440
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 9 cut(s) 132, 176, 655, 748, 780, 860, 872, 1175, 1256
BssMI GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 6 cut(s) 176, 748, 780, 860, 872, 1256
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 3 cut(s) 134, 803, 1176
Bst4CI ACNGT 6 cut(s) 725, 852, 905, 983, 1120, 1464
Bst6I CTCTTC 1 cut(s) 1308
BstC8I GCNNGC 5 cut(s) 103, 699, 976, 1146, 1507
BstDEI CTNAG 5 cut(s) 46, 816, 841, 1392, 1512
BstDSI CCRYGG 1 cut(s) 860
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 3 cut(s) 1050, 1252, 1397
BstHHI GCGC 1 cut(s) 1511
BstKTI GATC 6 cut(s) 228, 261, 475, 766, 1197, 1435
BstMBI GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
BstMWI GCNNNNNNNGC 5 cut(s) 239, 464, 660, 893, 1258
BstNI CCWGG 3 cut(s) 134, 803, 1176
BstNSI RCATGY 3 cut(s) 24, 1204, 1509
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 5 cut(s) 132, 655, 709, 801, 1174
BstSFI CTRYAG 4 cut(s) 695, 979, 997, 1443
BstSLI GKGCMC 2 cut(s) 1078, 1303
BstX2I RGATCY 1 cut(s) 1432
BstYI RGATCY 1 cut(s) 1432
BsuRI GGCC 4 cut(s) 145, 352, 654, 701
BtgI CCRYGG 1 cut(s) 860
BtsCI GGATG 3 cut(s) 1050, 1252, 1397
BtsIMutI CAGTG 4 cut(s) 370, 910, 1389, 1456
Cac8I GCNNGC 5 cut(s) 103, 699, 976, 1146, 1507
CfoI GCGC 1 cut(s) 1511
Cfr13I GGNCC 7 cut(s) 350, 418, 653, 707, 805, 955, 1273
CseI GACGC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 484
CspCI CAANNNNNGTGG 4 cut(s) 889, 924, 1410, 1445
CviAII CATG 8 cut(s) 21, 404, 478, 589, 861, 1201, 1496, 1506
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 5 cut(s) 46, 816, 841, 1392, 1512
DpnI GATC 6 cut(s) 227, 260, 474, 765, 1196, 1434
DpnII GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
DriI GACNNNNNGTC 1 cut(s) 713
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 1308
Eam1105I GACNNNNNGTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 1308
Eco130I CCWWGG 6 cut(s) 176, 748, 780, 860, 872, 1256
Eco47I GGWCC 5 cut(s) 418, 707, 805, 955, 1273
Eco88I CYCGRG 1 cut(s) 1238
Eco91I GGTNACC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 500
EcoRII CCWGG 3 cut(s) 132, 801, 1174
EcoT14I CCWWGG 6 cut(s) 176, 748, 780, 860, 872, 1256
ErhI CCWWGG 6 cut(s) 176, 748, 780, 860, 872, 1256
FaeI CATG 8 cut(s) 24, 407, 481, 592, 864, 1204, 1499, 1509
FaqI GGGAC 2 cut(s) 467, 1387
FatI CATG 8 cut(s) 20, 403, 477, 588, 860, 1200, 1495, 1505
FauNDI CATATG 2 cut(s) 122, 517
FbaI TGATCA 2 cut(s) 225, 1194
Fnu4HI GCNGC 1 cut(s) 661
FokI GGATG 3 cut(s) 1037, 1239, 1384
Fsp4HI GCNGC 1 cut(s) 661
FspBI CTAG 3 cut(s) 102, 719, 1427
GlaI GCGC 1 cut(s) 1510
GluI GCNGC 1 cut(s) 661
HaeIII GGCC 4 cut(s) 145, 352, 654, 701
HapII CCGG 3 cut(s) 657, 705, 711
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 1511
Hin1II CATG 8 cut(s) 24, 407, 481, 592, 864, 1204, 1499, 1509
Hin6I GCGC 1 cut(s) 1509
HinP1I GCGC 1 cut(s) 1509
HinfI GANTC 5 cut(s) 433, 512, 730, 1375, 1394
HpaII CCGG 3 cut(s) 657, 705, 711
HphI GGTGA 2 cut(s) 458, 893
Hpy166II GTNNAC 5 cut(s) 486, 635, 994, 1076, 1301
Hpy188I TCNGA 4 cut(s) 263, 819, 1282, 1402
Hpy188III TCNNGA 7 cut(s) 9, 203, 334, 470, 788, 1061, 1409
Hpy8I GTNNAC 5 cut(s) 486, 635, 994, 1076, 1301
HpyAV CCTTC 4 cut(s) 410, 1147, 1228, 1328
HpyCH4III ACNGT 6 cut(s) 725, 852, 905, 983, 1120, 1464
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 464, 660, 893, 1258
HpyF3I CTNAG 5 cut(s) 46, 816, 841, 1392, 1512
Hsp92II CATG 8 cut(s) 24, 407, 481, 592, 864, 1204, 1499, 1509
HspAI GCGC 1 cut(s) 1509
Ksp22I TGATCA 2 cut(s) 225, 1194
Kzo9I GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
LmnI GCTCC 1 cut(s) 893
LweI GCATC 1 cut(s) 1261
MaeI CTAG 3 cut(s) 102, 719, 1427
MaeIII GTNAC 5 cut(s) 500, 610, 727, 983, 1180
MalI GATC 6 cut(s) 227, 260, 474, 765, 1196, 1434
MboI GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
MboII GAAGA 3 cut(s) 223, 421, 1325
MflI RGATCY 1 cut(s) 1432
MhlI GDGCHC 3 cut(s) 1078, 1113, 1303
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 5 cut(s) 115, 192, 264, 288, 298
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 4 cut(s) 521, 724, 1369, 1403
MmeI TCCRAC 3 cut(s) 791, 1230, 1425
MnlI CCTC 6 cut(s) 77, 263, 877, 1010, 1264, 1450
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 3 cut(s) 198, 846, 1035
MslI CAYNNNNRTG 1 cut(s) 1081
Msp20I TGGCCA 1 cut(s) 145
MspA1I CMGCKG 1 cut(s) 1295
MspI CCGG 3 cut(s) 657, 705, 711
MspR9I CCNGG 5 cut(s) 134, 657, 711, 803, 1176
Mva1269I GAATGC 3 cut(s) 27, 242, 400
MvaI CCWGG 3 cut(s) 134, 803, 1176
MwoI GCNNNNNNNGC 5 cut(s) 239, 464, 660, 893, 1258
NciI CCSGG 2 cut(s) 657, 711
NcoI CCATGG 1 cut(s) 860
NdeI CATATG 2 cut(s) 122, 517
NdeII GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 8 cut(s) 24, 407, 481, 592, 864, 1204, 1499, 1509
NlaIV GGNNCC 5 cut(s) 373, 420, 655, 709, 1434
NmuCI GTSAC 4 cut(s) 610, 727, 983, 1180
NspI RCATGY 3 cut(s) 24, 1204, 1509
PaeI GCATGC 1 cut(s) 1509
PciI ACATGT 1 cut(s) 1200
PctI GAATGC 3 cut(s) 27, 242, 400
PfeI GAWTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 1337
PkrI GCNGC 1 cut(s) 662
PleI GAGTC 4 cut(s) 520, 724, 1369, 1402
PpsI GAGTC 4 cut(s) 520, 724, 1369, 1402
PscI ACATGT 1 cut(s) 1200
PsiI TTATAA 2 cut(s) 297, 776
Psp6I CCWGG 3 cut(s) 132, 801, 1174
PspEI GGTNACC 1 cut(s) 500
PspGI CCWGG 3 cut(s) 132, 801, 1174
PspN4I GGNNCC 5 cut(s) 373, 420, 655, 709, 1434
PspPI GGNCC 7 cut(s) 350, 418, 653, 707, 805, 955, 1273
PstI CTGCAG 3 cut(s) 699, 1001, 1447
PsuI RGATCY 1 cut(s) 1432
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 1081
SaqAI TTAA 3 cut(s) 198, 846, 1035
SatI GCNGC 1 cut(s) 661
Sau3AI GATC 6 cut(s) 225, 258, 472, 763, 1194, 1432
Sau96I GGNCC 7 cut(s) 350, 418, 653, 707, 805, 955, 1273
SbfI CCTGCAGG 1 cut(s) 699
SchI GAGTC 4 cut(s) 521, 724, 1369, 1403
ScrFI CCNGG 5 cut(s) 134, 657, 711, 803, 1176
SdaI CCTGCAGG 1 cut(s) 699
SduI GDGCHC 3 cut(s) 1078, 1113, 1303
SfaNI GCATC 1 cut(s) 1261
SfcI CTRYAG 4 cut(s) 695, 979, 997, 1443
SinI GGWCC 5 cut(s) 418, 707, 805, 955, 1273
SmiMI CAYNNNNRTG 1 cut(s) 1081
SpeI ACTAGT 1 cut(s) 1426
SphI GCATGC 1 cut(s) 1509
Sse8387I CCTGCAGG 1 cut(s) 699
Sse9I AATT 5 cut(s) 115, 192, 264, 288, 298
SsiI CCGC 2 cut(s) 369, 660
SspMI CTAG 3 cut(s) 102, 719, 1427
StyD4I CCNGG 5 cut(s) 132, 655, 709, 801, 1174
StyI CCWWGG 6 cut(s) 176, 748, 780, 860, 872, 1256
TaaI ACNGT 6 cut(s) 725, 852, 905, 983, 1120, 1464
TaqI TCGA 5 cut(s) 8, 69, 82, 95, 1221
TasI AATT 5 cut(s) 115, 192, 264, 288, 298
TatI WGTACW 1 cut(s) 483
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 3 cut(s) 198, 846, 1035
Tru9I TTAA 3 cut(s) 198, 846, 1035
TscAI CASTG 4 cut(s) 370, 910, 1396, 1456
TseFI GTSAC 4 cut(s) 610, 727, 983, 1180
Tsp45I GTSAC 4 cut(s) 610, 727, 983, 1180
TspDTI ATGAA 7 cut(s) 109, 264, 392, 605, 801, 1039, 1112
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 4 cut(s) 370, 910, 1396, 1456
Van91I CCANNNNNTGG 1 cut(s) 1337
VneI GTGCAC 2 cut(s) 1074, 1299
VpaK11BI GGWCC 5 cut(s) 418, 707, 805, 955, 1273
XapI RAATTY 1 cut(s) 192
XceI RCATGY 3 cut(s) 24, 1204, 1509
XspI CTAG 3 cut(s) 102, 719, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.