Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

44418930 .. 44473210

Gene Structure 54281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG325700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTAGCGGATTCAAGGACAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAGCTCCGCAGTGGTCGCCTTGTGGCCATCAAGATGTTGAGTAAGTCCAAAACTAATGGGCAAGATTTTATCAATGAGGTTGCTACTATAGGAAGGATTCACCATGTTAACGTGCCGGAACTAGATCCAGAAGATGGATCACAAATTCTAGCTGAACCCCTGAGCGGTATTGGTGATTATGTGCAAGAAAATGAGGGTAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTTGAAATTGGAGGAGTCTTCCACACCCAAGGCAACAAGGATCAGAATTGGACGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCGTGAAAGATGGTTCTGGGCCTTTCTTGTTCCGTGGCGGTTGTCCTCAGCCGAAAAGATGGGATGAGATCCATGAGTTCTTCAACCAAACACAAGCCAAACTCTTGTTTGGATTGAATGCCCTTCATGGGAAGCAAGCGGACCTTAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAACGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGCTGAGTCATATGAGCTTGGAAACGAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTGAACAATATGCCAAAGACATGAAAAAGCTCAAACAACTTGTGACAGAGTTGTTCCCAGATGGTAAACAGCCAAAGGTTTTAGGCCCCGGCGGCTCTGAACCCTTATACTCTTTTTTAGTTGTCTTAATCACCTTGTTTAAGTTGCACTCGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

296

Amino Acids

32.71

Weight (kDa)

7.63

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 61	2.2e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 58	5.9e-07	Protein kinase domain
Glyco_hydro_79n	PF03662	103 - 274	1.9e-53	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	225
AciI	CCGC	6 cut(s)	9, 67, 225, 474, 575, 819
AclWI	GGATC	4 cut(s)	179, 205, 371, 499
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	2 cut(s)	53, 644
AfiI	CCNNNNNNNGG	3 cut(s)	194, 224, 564
AgsI	TTSAA	4 cut(s)	16, 328, 520, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AleI	CACNNNNGTG	2 cut(s)	296, 879
AluBI	AGCT	5 cut(s)	64, 212, 682, 728, 757
AluI	AGCT	5 cut(s)	64, 212, 682, 728, 757
AlwI	GGATC	4 cut(s)	179, 205, 371, 499
AoxI	GGCC	3 cut(s)	84, 455, 811
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	455, 577, 812
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	5 cut(s)	41, 152, 245, 617, 850
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	44
BauI	CACGAG	2 cut(s)	627, 877
BbsI	GAAGAC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	6 cut(s)	95, 188, 440, 489, 656, 782
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BcnI	CCSGG	1 cut(s)	816
BfaI	CTAG	4 cut(s)	6, 182, 209, 296
BfmI	CTRYAG	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	819
BisI	GCNGC	1 cut(s)	820
BlsI	GCNGC	1 cut(s)	821
Bme1390I	CCNGG	1 cut(s)	816
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	455, 577, 812
BmiI	GGNNCC	3 cut(s)	46, 814, 886
BmrFI	CCNGG	1 cut(s)	816
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	221, 483
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	351, 469, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 224, 564
Bse3DI	GCAATG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	351, 469, 814
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	194, 224, 564
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	3 cut(s)	212, 497, 660
BseRI	GAGGAG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	86, 457, 813
BshNI	GGYRCC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	176, 816
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	3 cut(s)	194, 224, 564
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	3 cut(s)	86, 457, 813
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	184, 197, 363, 504, 631
BspACI	CCGC	6 cut(s)	9, 67, 225, 474, 575, 819
BspANI	GGCC	3 cut(s)	86, 457, 813
BspCNI	CTCAG	3 cut(s)	213, 496, 661
BspLI	GGNNCC	3 cut(s)	46, 814, 886
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	179, 205, 371, 499
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	351, 469, 814
BssMI	GATC	5 cut(s)	184, 197, 363, 504, 631
BssSI	CACGAG	2 cut(s)	627, 877
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	2 cut(s)	627, 877
Bst4CI	ACNGT	2 cut(s)	49, 276
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	7, 573
BstDEI	CTNAG	3 cut(s)	221, 483, 669
BstDSI	CCRYGG	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	5 cut(s)	187, 200, 366, 507, 634
BstMBI	GATC	5 cut(s)	184, 197, 363, 504, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 623, 819
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	814
BstSFI	CTRYAG	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	184, 504
BstYI	RGATCY	2 cut(s)	184, 504
BsuRI	GGCC	3 cut(s)	86, 457, 813
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	7, 573
Cfr13I	GGNCC	3 cut(s)	455, 577, 812
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	52, 643
CviAII	CATG	5 cut(s)	164, 509, 563, 637, 748
CviQI	GTAC	2 cut(s)	52, 643
DdeI	CTNAG	3 cut(s)	221, 483, 669
DpnI	GATC	5 cut(s)	186, 199, 365, 506, 633
DpnII	GATC	5 cut(s)	184, 197, 363, 504, 631
EaeI	YGGCCR	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	577
Eco91I	GGTNACC	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	812
EcoO65I	GGTNACC	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	5 cut(s)	167, 512, 566, 640, 751
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	5 cut(s)	163, 508, 562, 636, 747
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	1 cut(s)	820
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	820
FspBI	CTAG	4 cut(s)	6, 182, 209, 296
GluI	GCNGC	1 cut(s)	820
HaeIII	GGCC	3 cut(s)	86, 457, 813
HapII	CCGG	2 cut(s)	176, 816
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	5 cut(s)	167, 512, 566, 640, 751
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	6 cut(s)	12, 157, 304, 338, 592, 671
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	176, 816
HphI	GGTGA	5 cut(s)	41, 152, 245, 617, 850
Hpy166II	GTNNAC	4 cut(s)	52, 169, 645, 794
Hpy188I	TCNGA	2 cut(s)	368, 826
Hpy188III	TCNNGA	4 cut(s)	91, 188, 439, 629
Hpy8I	GTNNAC	4 cut(s)	52, 169, 645, 794
HpyAV	CCTTC	3 cut(s)	26, 147, 569
HpyCH4III	ACNGT	2 cut(s)	49, 276
HpyCH4IV	ACGT	2 cut(s)	171, 376
HpyCH4V	TGCA	5 cut(s)	244, 385, 429, 716, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 623, 819
HpyF3I	CTNAG	3 cut(s)	221, 483, 669
HpySE526I	ACGT	2 cut(s)	171, 376
Hsp92II	CATG	5 cut(s)	167, 512, 566, 640, 751
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	184, 197, 363, 504, 631
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	189, 201, 233, 438, 678, 798, 829
MaeI	CTAG	4 cut(s)	6, 182, 209, 296
MaeII	ACGT	2 cut(s)	171, 376
MaeIII	GTNAC	2 cut(s)	659, 769
MalI	GATC	5 cut(s)	186, 199, 365, 506, 633
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	5 cut(s)	184, 197, 363, 504, 631
MboII	GAAGA	4 cut(s)	203, 313, 333, 508
MflI	RGATCY	2 cut(s)	184, 504
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	7 cut(s)	23, 204, 262, 329, 369, 393, 403
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	347, 680
MnlI	CCTC	5 cut(s)	29, 130, 247, 328, 492
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	5 cut(s)	168, 279, 582, 854, 867
MslI	CAYNNNNRTG	3 cut(s)	92, 296, 879
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	176, 816
MspR9I	CCNGG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	559
MwoI	GCNNNNNNNGC	3 cut(s)	75, 623, 819
NciI	CCSGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	5 cut(s)	184, 197, 363, 504, 631
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	167, 512, 566, 640, 751
NlaIV	GGNNCC	3 cut(s)	46, 814, 886
NmuCI	GTSAC	1 cut(s)	769
OliI	CACNNNNGTG	2 cut(s)	296, 879
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	12, 157, 304, 592
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	821
PleI	GAGTC	2 cut(s)	346, 679
PpsI	GAGTC	2 cut(s)	346, 679
PsiI	TTATAA	1 cut(s)	402
PspEI	GGTNACC	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	46, 814, 886
PspPI	GGNCC	3 cut(s)	455, 577, 812
PsuI	RGATCY	2 cut(s)	184, 504
RsaI	GTAC	2 cut(s)	53, 644
RsaNI	GTAC	2 cut(s)	52, 643
RseI	CAYNNNNRTG	3 cut(s)	92, 296, 879
SaqAI	TTAA	5 cut(s)	168, 279, 582, 854, 867
SatI	GCNGC	1 cut(s)	820
Sau3AI	GATC	5 cut(s)	184, 197, 363, 504, 631
Sau96I	GGNCC	3 cut(s)	455, 577, 812
SchI	GAGTC	2 cut(s)	347, 680
ScrFI	CCNGG	1 cut(s)	816
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	3 cut(s)	92, 296, 879
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	7 cut(s)	23, 204, 262, 329, 369, 393, 403
SsiI	CCGC	6 cut(s)	9, 67, 225, 474, 575, 819
SspMI	CTAG	4 cut(s)	6, 182, 209, 296
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	49, 276
TaiI	ACGT	2 cut(s)	174, 379
TasI	AATT	7 cut(s)	23, 204, 262, 329, 369, 393, 403
TatI	WGTACW	2 cut(s)	51, 642
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	4 cut(s)	12, 157, 304, 592
Tru1I	TTAA	5 cut(s)	168, 279, 582, 854, 867
Tru9I	TTAA	5 cut(s)	168, 279, 582, 854, 867
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	769
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	3 cut(s)	369, 551, 764
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	4 cut(s)	6, 182, 209, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.