Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013774.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 648

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013774.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

gatttgaagaacaagaccttgatcaatgcagtaaaggcattcaatacaataaggatcagaattggaggttcattgcaagaccaaattatttataattttggttatggagtgaaagactgcaaccaaatcgtgaaagatggttctgggcctttcttgttccgtggcggttgtcttcagccgaaaagatgggatgagatccatgagttcttcaaccaaacacaagccaaactcttgtttggattgaatgcccttcatgggaagaaagcggaccctaaagacaagattctttgggttggtgattgggacgcaaaaaacgctcgtgatctcatggagtacaccatctcaaagggttaccctgttgagtcatatgagcttggtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

127

Amino Acids

14.46

Weight (kDa)

8.86

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AciI	CCGC	2 cut(s)	165, 266
AclWI	GGATC	2 cut(s)	62, 190
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	7, 43, 211, 244
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
AlwI	GGATC	2 cut(s)	62, 190
AoxI	GGCC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	146, 268
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	164
BccI	CCATC	3 cut(s)	131, 180, 347
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BclI	TGATCA	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	146, 268
BmiI	GGNNCC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	2 cut(s)	38, 250
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	21, 54, 195, 322
BspACI	CCGC	2 cut(s)	165, 266
BspANI	GGCC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	2 cut(s)	62, 190
BsrDI	GCAATG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	4 cut(s)	21, 54, 195, 322
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	160
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	24, 57, 198, 325
BstMBI	GATC	4 cut(s)	21, 54, 195, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 314
BstPI	GGTNACC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	146, 268
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	200, 254, 328
CviJI	RGCY	4 cut(s)	148, 178, 224, 373
CviKI_1	RGCY	4 cut(s)	148, 178, 224, 373
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	4 cut(s)	23, 56, 197, 324
DpnII	GATC	4 cut(s)	21, 54, 195, 322
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
FaeI	CATG	3 cut(s)	203, 257, 331
FaiI	YATR	8 cut(s)	93, 105, 201, 255, 329, 367, 369, 380
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	199, 253, 327
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	21
FokI	GGATG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	203, 257, 331
HinfI	GANTC	2 cut(s)	283, 362
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	130, 320
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	29, 76, 120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 314
Hsp92II	CATG	3 cut(s)	203, 257, 331
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	21, 54, 195, 322
LpnPI	CCDG	2 cut(s)	129, 369
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	23, 56, 197, 324
MboI	GATC	4 cut(s)	21, 54, 195, 322
MboII	GAAGA	4 cut(s)	19, 164, 199, 271
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	3 cut(s)	60, 84, 94
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	1 cut(s)	59
Mva1269I	GAATGC	2 cut(s)	38, 250
MwoI	GCNNNNNNNGC	2 cut(s)	35, 314
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	21, 54, 195, 322
NlaIII	CATG	3 cut(s)	203, 257, 331
NlaIV	GGNNCC	1 cut(s)	270
PctI	GAATGC	2 cut(s)	38, 250
PfeI	GAWTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	146, 268
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
Sau3AI	GATC	4 cut(s)	21, 54, 195, 322
Sau96I	GGNCC	2 cut(s)	146, 268
SchI	GAGTC	1 cut(s)	371
SetI	ASST	3 cut(s)	20, 70, 375
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	3 cut(s)	60, 84, 94
SsiI	CCGC	2 cut(s)	165, 266
TasI	AATT	3 cut(s)	60, 84, 94
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	60, 242
TspGWI	ACGGA	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.