Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

58866985 .. 58869828

Gene Structure 2844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG369300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGGTCGAGAGCTATTGCATGTTGCATTCTGTTGTCATTGTTCTCAGTAGCTTTAGCTGAATATGTCGATGTCAGGGTTCGAGGAGTGGTTTCGATAGCTAGCACAGATGACAATTTCATATGTGCAACCCTGGATTGGTGGCCAACTGATAAATGTGATTACAATCAATGTCCTTGGGGAAAAGCTGGAATTTTTAATCTGGATTTGAAGAACAAGACCTTGATCAATGCAGTAAAGGCATTCAATACAATAAGGATCAGAATCGGAGGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCGTGAAAGATGGTTCTGGGCCTTTCTTGTTCAGTGGCGGTTGTCTTCAGCCGAAAAGATGGGATGAGATCCATGAGTTCTTCAACCAAACACAAGCCAAACTCTTGTTTGGATTGAATGCCCTTCATGGGAAGAAAACGGACCCGAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAACGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGATTCATATGAGCTTGGAAACGAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTGAACAATATGCCAAAGACATGAAAAAGCTCAAACAACTTGTGACAGAGTTGTTCCCAGATGGTAAACAGCCAAAGGTTTTAGGCCCCGGCGGCTTTTATGAGAAAAAGTGGTTCAATGACTTCCTGCAGGCCACCGGACCCGGTGTCCTAGACGGTGTGACTCATCACACTTACGACCTTGGTGCTGGTGTTGATCCAACCCTTATAACCAAGGTTCAAGACCCATTTTACCTGGACCATTCATCTCAGACATATAATGATGTGGCAAACTCAGTTAAACAGTTTGCCCCATGGACAGACCCTTGGGTTGGTGAGGCTGGTGGAGCTTACAACAGTGGTGGCAAAGATGTTTCACATACCTTTGCTAATGGCTTTTGGTATTTGGACCAACTTGGTATGACAGCAAGCTACAGTCACAAGGTTTACTGCAGACAAGCCTTGATTGGAGGGAACTATGCCCTACTTAATACCACATCTTTCATCCCTAATCCTGACTACTATGGTGCACTCCTATGGCATAGACTGATGGGAAATAAAGTGCTCTCTACCGTTCATTATGGCTCTCCCTTCTTGCGTGCATATACTCATTGTTCAAAGAAAAAGGTAATTCTACTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

414

Amino Acids

46.12

Weight (kDa)

7.11

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	24 - 340	9.3e-143	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 830
AciI	CCGC	2 cut(s)	369, 714
AclWI	GGATC	3 cut(s)	266, 394, 812
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	138, 459, 932
AgsI	TTSAA	7 cut(s)	211, 247, 415, 448, 739, 842, 1218
AhdI	GACNNNNNGTC	1 cut(s)	767
AjnI	CCWGG	2 cut(s)	132, 855
Alw21I	GWGCWC	2 cut(s)	1132, 1167
Alw44I	GTGCAC	1 cut(s)	1128
AlwI	GGATC	3 cut(s)	266, 394, 812
AoxI	GGCC	4 cut(s)	143, 350, 706, 753
ApaLI	GTGCAC	1 cut(s)	1128
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	6 cut(s)	350, 472, 707, 761, 859, 1009
AsuC2I	CCSGG	2 cut(s)	711, 765
AsuHPI	GGTGA	2 cut(s)	512, 947
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	4 cut(s)	472, 761, 859, 1009
BaeGI	GKGCMC	1 cut(s)	1132
BalI	TGGCCA	1 cut(s)	145
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	1132, 1167
BccI	CCATC	5 cut(s)	335, 384, 551, 677, 1144
BcgI	CGANNNNNNTGC	4 cut(s)	313, 347, 788, 822
BciT130I	CCWGG	2 cut(s)	134, 857
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	711, 765
BfaI	CTAG	2 cut(s)	102, 773
BfmI	CTRYAG	3 cut(s)	749, 1033, 1051
BglI	GCCNNNNNGGC	1 cut(s)	714
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
Bme1390I	CCNGG	4 cut(s)	134, 711, 765, 857
Bme18I	GGWCC	4 cut(s)	472, 761, 859, 1009
BmeRI	GACNNNNNGTC	1 cut(s)	767
BmgT120I	GGNCC	6 cut(s)	350, 472, 707, 761, 859, 1009
BmiI	GGNNCC	3 cut(s)	474, 709, 763
BmrFI	CCNGG	4 cut(s)	134, 711, 765, 857
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	711, 765
BsaBI	GATNNNNATC	2 cut(s)	165, 263
BsaJI	CCNNGG	7 cut(s)	132, 176, 709, 802, 834, 914, 926
BsaWI	WCCGGW	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 459, 932
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	2 cut(s)	165, 263
BseBI	CCWGG	2 cut(s)	134, 857
BseDI	CCNNGG	7 cut(s)	132, 176, 709, 802, 834, 914, 926
BseGI	GGATG	2 cut(s)	400, 1104
BseJI	GATNNNNATC	2 cut(s)	165, 263
BseLI	CCNNNNNNNGG	3 cut(s)	138, 459, 932
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	60, 884, 909
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	1132
BshFI	GGCC	4 cut(s)	145, 352, 708, 755
BsiHKAI	GWGCWC	2 cut(s)	1132, 1167
BsiSI	CCGG	3 cut(s)	711, 759, 765
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	138, 459, 932
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	3 cut(s)	27, 242, 454
BsnI	GGCC	4 cut(s)	145, 352, 708, 755
Bsp1286I	GDGCHC	2 cut(s)	1132, 1167
Bsp143I	GATC	5 cut(s)	225, 258, 399, 526, 817
Bsp19I	CCATGG	1 cut(s)	914
BspACI	CCGC	2 cut(s)	369, 714
BspANI	GGCC	4 cut(s)	145, 352, 708, 755
BspCNI	CTCAG	3 cut(s)	59, 883, 908
BspLI	GGNNCC	3 cut(s)	474, 709, 763
BspMAI	CTGCAG	2 cut(s)	753, 1055
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	266, 394, 812
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	7 cut(s)	132, 176, 709, 802, 834, 914, 926
BssMI	GATC	5 cut(s)	225, 258, 399, 526, 817
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	5 cut(s)	176, 802, 834, 914, 926
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	134, 857
Bst4CI	ACNGT	5 cut(s)	779, 906, 959, 1037, 1174
BstC8I	GCNNGC	4 cut(s)	103, 753, 1030, 1200
BstDEI	CTNAG	3 cut(s)	46, 870, 895
BstDSI	CCRYGG	1 cut(s)	914
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	400, 1104
BstKTI	GATC	5 cut(s)	228, 261, 402, 529, 820
BstMBI	GATC	5 cut(s)	225, 258, 399, 526, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 518, 714, 947
BstNI	CCWGG	2 cut(s)	134, 857
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	4 cut(s)	132, 709, 763, 855
BstSFI	CTRYAG	3 cut(s)	749, 1033, 1051
BstSLI	GKGCMC	1 cut(s)	1132
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	4 cut(s)	145, 352, 708, 755
BtgI	CCRYGG	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	400, 1104
BtsIMutI	CAGTG	2 cut(s)	370, 964
Cac8I	GCNNGC	4 cut(s)	103, 753, 1030, 1200
Cfr13I	GGNCC	6 cut(s)	350, 472, 707, 761, 859, 1009
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	538
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviAII	CATG	6 cut(s)	21, 404, 458, 532, 643, 915
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	46, 870, 895
DpnI	GATC	5 cut(s)	227, 260, 401, 528, 819
DpnII	GATC	5 cut(s)	225, 258, 399, 526, 817
DriI	GACNNNNNGTC	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	767
Eco130I	CCWWGG	5 cut(s)	176, 802, 834, 914, 926
Eco47I	GGWCC	4 cut(s)	472, 761, 859, 1009
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	132, 855
EcoT14I	CCWWGG	5 cut(s)	176, 802, 834, 914, 926
ErhI	CCWWGG	5 cut(s)	176, 802, 834, 914, 926
FaeI	CATG	6 cut(s)	24, 407, 461, 535, 646, 918
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	6 cut(s)	20, 403, 457, 531, 642, 914
FauNDI	CATATG	2 cut(s)	122, 571
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	2 cut(s)	407, 1091
Fsp4HI	GCNGC	1 cut(s)	715
FspBI	CTAG	2 cut(s)	102, 773
GluI	GCNGC	1 cut(s)	715
HaeIII	GGCC	4 cut(s)	145, 352, 708, 755
HapII	CCGG	3 cut(s)	711, 759, 765
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	6 cut(s)	24, 407, 461, 535, 646, 918
HinfI	GANTC	4 cut(s)	264, 487, 566, 784
HpaII	CCGG	3 cut(s)	711, 759, 765
HphI	GGTGA	2 cut(s)	512, 947
Hpy166II	GTNNAC	4 cut(s)	540, 689, 1048, 1130
Hpy188I	TCNGA	3 cut(s)	263, 269, 873
Hpy188III	TCNNGA	6 cut(s)	9, 203, 334, 524, 842, 1115
Hpy8I	GTNNAC	4 cut(s)	540, 689, 1048, 1130
HpyAV	CCTTC	2 cut(s)	464, 1201
HpyCH4III	ACNGT	5 cut(s)	779, 906, 959, 1037, 1174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 518, 714, 947
HpyF3I	CTNAG	3 cut(s)	46, 870, 895
Hsp92II	CATG	6 cut(s)	24, 407, 461, 535, 646, 918
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	225, 258, 399, 526, 817
LmnI	GCTCC	1 cut(s)	947
MaeI	CTAG	2 cut(s)	102, 773
MaeIII	GTNAC	4 cut(s)	554, 664, 781, 1037
MalI	GATC	5 cut(s)	227, 260, 401, 528, 819
MboI	GATC	5 cut(s)	225, 258, 399, 526, 817
MboII	GAAGA	4 cut(s)	223, 368, 403, 475
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	1132, 1167
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	5 cut(s)	115, 192, 288, 298, 1230
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	778
MmeI	TCCRAC	1 cut(s)	845
MnlI	CCTC	4 cut(s)	77, 263, 931, 1064
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	3 cut(s)	198, 900, 1089
MslI	CAYNNNNRTG	1 cut(s)	1135
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	3 cut(s)	711, 759, 765
MspR9I	CCNGG	4 cut(s)	134, 711, 765, 857
Mva1269I	GAATGC	3 cut(s)	27, 242, 454
MvaI	CCWGG	2 cut(s)	134, 857
MwoI	GCNNNNNNNGC	4 cut(s)	239, 518, 714, 947
NciI	CCSGG	2 cut(s)	711, 765
NcoI	CCATGG	1 cut(s)	914
NdeI	CATATG	2 cut(s)	122, 571
NdeII	GATC	5 cut(s)	225, 258, 399, 526, 817
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	6 cut(s)	24, 407, 461, 535, 646, 918
NlaIV	GGNNCC	3 cut(s)	474, 709, 763
NmuCI	GTSAC	3 cut(s)	664, 781, 1037
NspI	RCATGY	1 cut(s)	24
PctI	GAATGC	3 cut(s)	27, 242, 454
PfeI	GAWTC	3 cut(s)	264, 487, 566
PkrI	GCNGC	1 cut(s)	716
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
PsiI	TTATAA	2 cut(s)	297, 830
Psp6I	CCWGG	2 cut(s)	132, 855
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	2 cut(s)	132, 855
PspN4I	GGNNCC	3 cut(s)	474, 709, 763
PspPI	GGNCC	6 cut(s)	350, 472, 707, 761, 859, 1009
PstI	CTGCAG	2 cut(s)	753, 1055
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	1135
SaqAI	TTAA	3 cut(s)	198, 900, 1089
SatI	GCNGC	1 cut(s)	715
Sau3AI	GATC	5 cut(s)	225, 258, 399, 526, 817
Sau96I	GGNCC	6 cut(s)	350, 472, 707, 761, 859, 1009
SbfI	CCTGCAGG	1 cut(s)	753
SchI	GAGTC	1 cut(s)	778
ScrFI	CCNGG	4 cut(s)	134, 711, 765, 857
SdaI	CCTGCAGG	1 cut(s)	753
SduI	GDGCHC	2 cut(s)	1132, 1167
SfcI	CTRYAG	3 cut(s)	749, 1033, 1051
SinI	GGWCC	4 cut(s)	472, 761, 859, 1009
SmiMI	CAYNNNNRTG	1 cut(s)	1135
SmlI	CTYRAG	1 cut(s)	1238
SmoI	CTYRAG	1 cut(s)	1238
Sse8387I	CCTGCAGG	1 cut(s)	753
Sse9I	AATT	5 cut(s)	115, 192, 288, 298, 1230
SsiI	CCGC	2 cut(s)	369, 714
SspMI	CTAG	2 cut(s)	102, 773
StyD4I	CCNGG	4 cut(s)	132, 709, 763, 855
StyI	CCWWGG	5 cut(s)	176, 802, 834, 914, 926
TaaI	ACNGT	5 cut(s)	779, 906, 959, 1037, 1174
TaqI	TCGA	4 cut(s)	8, 69, 82, 95
TasI	AATT	5 cut(s)	115, 192, 288, 298, 1230
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	3 cut(s)	264, 487, 566
Tru1I	TTAA	3 cut(s)	198, 900, 1089
Tru9I	TTAA	3 cut(s)	198, 900, 1089
TscAI	CASTG	2 cut(s)	370, 964
TseFI	GTSAC	3 cut(s)	664, 781, 1037
Tsp45I	GTSAC	3 cut(s)	664, 781, 1037
TspDTI	ATGAA	8 cut(s)	109, 264, 446, 558, 659, 855, 1093, 1166
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	370, 964
VneI	GTGCAC	1 cut(s)	1128
VpaK11BI	GGWCC	4 cut(s)	472, 761, 859, 1009
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	102, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.