Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

53105795 .. 53106573

Gene Structure 779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG374900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGGTCGAGAGCTATTGCATGTTGCATTCTGTTGTCATTGTTCTCAGTAGCTTTAGCTGAATATGTCGATGTCAGGGTTCGAGGAGTGGTTTCGATAGCTAGCACAGATGACAATTTCATATGTGCAACCCTGGATTGGTGGCCAACTAATAAATGTGATTACAATCAATGCCCTTGGGGAAAAGCTGGAATTTTTAATCTGCCGAAAAGATGGGATGAGATCCATGAGTTCTTCAACCAAACACAAGCCAAACTCTGGTTTGGATTGAATGCCCTTCATGGGAAGAAAACGGACCCGAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAACGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGAGTCATATGAGCTTGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

136

Amino Acids

15.53

Weight (kDa)

5.63

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	24 - 68	2e-19	Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n	PF03662	70 - 135	2.5e-21	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	258
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	138, 258, 282
AgsI	TTSAA	2 cut(s)	238, 271
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	6 cut(s)	14, 53, 59, 101, 188, 400
AluI	AGCT	6 cut(s)	14, 53, 59, 101, 188, 400
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	145
BauI	CACGAG	1 cut(s)	345
BccI	CCATC	2 cut(s)	207, 374
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	132, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 258, 282
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	132, 176
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	138, 258, 282
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	138, 258, 282
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	2 cut(s)	27, 277
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	222, 349
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	132, 176
BssMI	GATC	2 cut(s)	222, 349
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	225, 352
BstMBI	GATC	2 cut(s)	222, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	21, 227, 281, 355
CviJI	RGCY	8 cut(s)	14, 53, 59, 101, 145, 188, 251, 400
CviKI_1	RGCY	8 cut(s)	14, 53, 59, 101, 145, 188, 251, 400
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	2 cut(s)	224, 351
DpnII	GATC	2 cut(s)	222, 349
EaeI	YGGCCR	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	4 cut(s)	24, 230, 284, 358
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	20, 226, 280, 354
FauNDI	CATATG	2 cut(s)	122, 394
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	145
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	24, 230, 284, 358
HinfI	GANTC	2 cut(s)	310, 389
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	9, 347
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	20, 27, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	4 cut(s)	24, 230, 284, 358
Kzo9I	GATC	2 cut(s)	222, 349
LpnPI	CCDG	6 cut(s)	61, 119, 146, 174, 244, 396
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	224, 351
MboI	GATC	2 cut(s)	222, 349
MboII	GAAGA	2 cut(s)	226, 298
MflI	RGATCY	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	2 cut(s)	115, 192
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	2 cut(s)	27, 277
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeI	CATATG	2 cut(s)	122, 394
NdeII	GATC	2 cut(s)	222, 349
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	24, 230, 284, 358
NlaIV	GGNNCC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	24
PctI	GAATGC	2 cut(s)	27, 277
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	258
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	222, 349
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	6 cut(s)	16, 55, 61, 103, 190, 402
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	2 cut(s)	115, 192
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	4 cut(s)	8, 69, 82, 95
TasI	AATT	2 cut(s)	115, 192
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	109, 269
TspGWI	ACGGA	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.