Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

1695324 .. 1698384

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGTTGAGAGCTATTGCATGTTGCATTCTGTTGTCATTGTTCTCAGTAGCTTTAGATGAATATGTCGATGTCAGGGTTCGAGGAGTGGTTTCGCTAGCTAGCACAGATGACAATTTCATATGTGCAACCCTGGATTGGTGGCCAACTGATAAATGTGATTACAATCAATGTCCTTGGGGAAAAGCTGGAATTTTTAATCTGGATTTGAAGAACAAGACCTTGATCAATGCAGTAAAGGAGGAGATCAGAATTGGAGGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCGTGAAAGATGGTTTTGGGCCTTTCTTGTTCCGTGGCGGTTGTCTTCAGCCGAAAAGATGGGATGAGATCCATGAGTTCTTCAACCAAACACAAGTTGGTGATTGGGACGCAAAAAATGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGAGTCATATGAGCTTGGAAACGAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTGAACAATATGCCAAAGACATGAAAAAGCTCAAACAACTTGTGACAGAGTTGTTCCCAGATGGTAAACAGCCAAAGGTTTTAGGCCCCGGCGGCTTTTATGAGAAAAAGTGGTTCAATGACTTCCTGCAGGCCACCGGACCCAGTGTCCTAGATGGTGTGACTCATCACACTTACGACCTTGGTGCTGGTGTGGATCCAACCCTTATAACCAAGGTTCAAGACCCGTTTTACCTGGACCATTCATCTCAGACATATACTGATGTGGCAGACTCAGTTAAACAGCTTCTCCTACAACAGTCACTGGTTGGTACCCAATTTGATTACAATATTCACACAACGGATAACCAAATATATTTGTTGTGTGAACTAACAACCAACAACAAAAGAAAACAAAATTATGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

316

Amino Acids

35.64

Weight (kDa)

5.03

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	24 - 137	1.2e-42	Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n	PF03662	137 - 276	1.1e-53	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 749
Acc65I	GGTACC	1 cut(s)	851
AccB1I	GGYRCC	1 cut(s)	851
AciI	CCGC	2 cut(s)	357, 633
AclWI	GGATC	3 cut(s)	382, 731, 744
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	458, 853
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	4 cut(s)	211, 403, 658, 761
AhdI	GACNNNNNGTC	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	132, 774
AluBI	AGCT	8 cut(s)	14, 53, 101, 188, 496, 542, 571, 826
AluI	AGCT	8 cut(s)	14, 53, 101, 188, 496, 542, 571, 826
AlwI	GGATC	3 cut(s)	382, 731, 744
AlwNI	CAGNNNCTG	1 cut(s)	844
AoxI	GGCC	4 cut(s)	143, 338, 625, 672
ApoI	RAATTY	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	851
AspS9I	GGNCC	4 cut(s)	338, 626, 680, 778
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	431
AsuNHI	GCTAGC	2 cut(s)	97, 101
AvaII	GGWCC	2 cut(s)	680, 778
BalI	TGGCCA	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	851
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	356
BccI	CCATC	5 cut(s)	323, 372, 470, 596, 689
BcgI	CGANNNNNNTGC	4 cut(s)	301, 335, 707, 741
BciT130I	CCWGG	2 cut(s)	134, 776
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	630
BfaI	CTAG	3 cut(s)	98, 102, 692
BfmI	CTRYAG	1 cut(s)	668
BglI	GCCNNNNNGGC	1 cut(s)	633
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	3 cut(s)	134, 630, 776
Bme18I	GGWCC	2 cut(s)	680, 778
BmeRI	GACNNNNNGTC	1 cut(s)	686
BmgT120I	GGNCC	4 cut(s)	338, 626, 680, 778
BmiI	GGNNCC	4 cut(s)	628, 682, 738, 853
BmrFI	CCNGG	3 cut(s)	134, 630, 776
BmrI	ACTGGG	1 cut(s)	678
BmtI	GCTAGC	2 cut(s)	101, 105
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	6 cut(s)	132, 176, 352, 628, 721, 753
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	684, 849
Bse3DI	GCAATG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	134, 776
BseDI	CCNNGG	6 cut(s)	132, 176, 352, 628, 721, 753
BseGI	GGATG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	60, 803, 828
BseNI	ACTGG	2 cut(s)	684, 849
BseRI	GAGGAG	2 cut(s)	99, 257
BshFI	GGCC	4 cut(s)	145, 340, 627, 674
BshNI	GGYRCC	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	630, 678
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	145, 340, 627, 674
Bsp143I	GATC	5 cut(s)	225, 246, 387, 445, 736
BspACI	CCGC	2 cut(s)	357, 633
BspANI	GGCC	4 cut(s)	145, 340, 627, 674
BspCNI	CTCAG	3 cut(s)	59, 802, 827
BspLI	GGNNCC	4 cut(s)	628, 682, 738, 853
BspMAI	CTGCAG	1 cut(s)	672
BspOI	GCTAGC	2 cut(s)	101, 105
BspPI	GGATC	3 cut(s)	382, 731, 744
BspT107I	GGYRCC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	684, 849
BssECI	CCNNGG	6 cut(s)	132, 176, 352, 628, 721, 753
BssMI	GATC	5 cut(s)	225, 246, 387, 445, 736
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	3 cut(s)	176, 721, 753
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	134, 776
Bst4CI	ACNGT	1 cut(s)	840
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	99, 103, 672
BstDEI	CTNAG	3 cut(s)	46, 789, 814
BstDSI	CCRYGG	1 cut(s)	352
BstEII	GGTNACC	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	5 cut(s)	228, 249, 390, 448, 739
BstMBI	GATC	5 cut(s)	225, 246, 387, 445, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 633
BstNI	CCWGG	2 cut(s)	134, 776
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	132, 628, 774
BstSFI	CTRYAG	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	387, 736
BstYI	RGATCY	2 cut(s)	387, 736
BsuRI	GGCC	4 cut(s)	145, 340, 627, 674
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	691, 842
Cac8I	GCNNGC	3 cut(s)	99, 103, 672
CaiI	CAGNNNCTG	1 cut(s)	844
Cfr13I	GGNCC	4 cut(s)	338, 626, 680, 778
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	457, 852
CviAII	CATG	4 cut(s)	21, 392, 451, 562
CviQI	GTAC	2 cut(s)	457, 852
DdeI	CTNAG	3 cut(s)	46, 789, 814
DpnI	GATC	5 cut(s)	227, 248, 389, 447, 738
DpnII	GATC	5 cut(s)	225, 246, 387, 445, 736
DriI	GACNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	686
Eco130I	CCWWGG	3 cut(s)	176, 721, 753
Eco47I	GGWCC	2 cut(s)	680, 778
Eco57I	CTGAAG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	132, 774
EcoT14I	CCWWGG	3 cut(s)	176, 721, 753
ErhI	CCWWGG	3 cut(s)	176, 721, 753
FaeI	CATG	4 cut(s)	24, 395, 454, 565
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	20, 391, 450, 561
FauNDI	CATATG	2 cut(s)	122, 490
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	3 cut(s)	98, 102, 692
GluI	GCNGC	1 cut(s)	634
HaeIII	GGCC	4 cut(s)	145, 340, 627, 674
HapII	CCGG	2 cut(s)	630, 678
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	4 cut(s)	24, 395, 454, 565
HinfI	GANTC	3 cut(s)	485, 703, 812
HpaII	CCGG	2 cut(s)	630, 678
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	459, 608, 908
Hpy188I	TCNGA	2 cut(s)	251, 792
Hpy188III	TCNNGA	4 cut(s)	203, 322, 443, 761
Hpy8I	GTNNAC	3 cut(s)	459, 608, 908
HpyCH4III	ACNGT	1 cut(s)	840
HpyCH4V	TGCA	8 cut(s)	20, 27, 128, 233, 268, 312, 530, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 633
HpyF3I	CTNAG	3 cut(s)	46, 789, 814
Hsp92II	CATG	4 cut(s)	24, 395, 454, 565
KpnI	GGTACC	1 cut(s)	855
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	225, 246, 387, 445, 736
MaeI	CTAG	3 cut(s)	98, 102, 692
MaeIII	GTNAC	4 cut(s)	473, 583, 700, 840
MalI	GATC	5 cut(s)	227, 248, 389, 447, 738
MboI	GATC	5 cut(s)	225, 246, 387, 445, 736
MboII	GAAGA	3 cut(s)	223, 356, 391
MflI	RGATCY	2 cut(s)	387, 736
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	7 cut(s)	115, 192, 252, 276, 286, 857, 937
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	494, 697, 806
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	3 cut(s)	77, 235, 251
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	2 cut(s)	198, 819
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	2 cut(s)	630, 678
MspR9I	CCNGG	3 cut(s)	134, 630, 776
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	134, 776
MwoI	GCNNNNNNNGC	2 cut(s)	437, 633
NciI	CCSGG	1 cut(s)	630
NdeI	CATATG	2 cut(s)	122, 490
NdeII	GATC	5 cut(s)	225, 246, 387, 445, 736
NheI	GCTAGC	2 cut(s)	97, 101
NlaIII	CATG	4 cut(s)	24, 395, 454, 565
NlaIV	GGNNCC	4 cut(s)	628, 682, 738, 853
NmuCI	GTSAC	3 cut(s)	583, 700, 840
NspI	RCATGY	1 cut(s)	24
PctI	GAATGC	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	635
PleI	GAGTC	3 cut(s)	493, 697, 806
PpsI	GAGTC	3 cut(s)	493, 697, 806
PsiI	TTATAA	2 cut(s)	285, 749
Psp6I	CCWGG	2 cut(s)	132, 774
PspEI	GGTNACC	1 cut(s)	473
PspGI	CCWGG	2 cut(s)	132, 774
PspN4I	GGNNCC	4 cut(s)	628, 682, 738, 853
PspPI	GGNCC	4 cut(s)	338, 626, 680, 778
PstI	CTGCAG	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	844
PsuI	RGATCY	2 cut(s)	387, 736
RsaI	GTAC	2 cut(s)	458, 853
RsaNI	GTAC	2 cut(s)	457, 852
SaqAI	TTAA	2 cut(s)	198, 819
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	5 cut(s)	225, 246, 387, 445, 736
Sau96I	GGNCC	4 cut(s)	338, 626, 680, 778
SbfI	CCTGCAGG	1 cut(s)	672
SchI	GAGTC	3 cut(s)	494, 697, 806
ScrFI	CCNGG	3 cut(s)	134, 630, 776
SdaI	CCTGCAGG	1 cut(s)	672
SfcI	CTRYAG	1 cut(s)	668
SinI	GGWCC	2 cut(s)	680, 778
Sse8387I	CCTGCAGG	1 cut(s)	672
Sse9I	AATT	7 cut(s)	115, 192, 252, 276, 286, 857, 937
SsiI	CCGC	2 cut(s)	357, 633
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	3 cut(s)	98, 102, 692
StyD4I	CCNGG	3 cut(s)	132, 628, 774
StyI	CCWWGG	3 cut(s)	176, 721, 753
TaaI	ACNGT	1 cut(s)	840
TaqI	TCGA	2 cut(s)	69, 82
TasI	AATT	7 cut(s)	115, 192, 252, 276, 286, 857, 937
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	636
Tru1I	TTAA	2 cut(s)	198, 819
Tru9I	TTAA	2 cut(s)	198, 819
TscAI	CASTG	2 cut(s)	691, 849
TseFI	GTSAC	3 cut(s)	583, 700, 840
Tsp45I	GTSAC	3 cut(s)	583, 700, 840
TspDTI	ATGAA	5 cut(s)	75, 109, 252, 578, 774
TspGWI	ACGGA	2 cut(s)	341, 896
TspRI	CASTG	2 cut(s)	691, 849
VpaK11BI	GGWCC	2 cut(s)	680, 778
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XspI	CTAG	3 cut(s)	98, 102, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.