Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Reverse (-)

26664493 .. 26666297

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGGTCGAGTGCTATCGCATGTTGCATTCTGTTGTCATTGTTCTCAGTGGCTTTAGCTGAATATGTCGATGTCAGGGTTCGAGGAGTGGTTTCGATAGCTAGCACAGATGACAATTTCATATGTGCAACCCTGGATTGGTGGCCAACTGATAAATGTGATTACAATCAATGTCCTTGGGGAAAAGCTGGAATTTTTAATCTGGATTTGAAGAACAAGACCTTGATCAATGCAGTAAAGGCATTCAATACAATAAGGATCAGAATTGGACGTTCATTGCAAGACCAAATTATTTATAATTTTGGTTATGGAGTGAAAGACTGCAACCAAATCATGAAAGATGGTTTTGGGCCTTTCTTGTTCCGTGGCGGTTGTCCTCAGCCGAAAAGATGGGATGAGATCCATGAGTTCTTCAACCAAACACAAGCCAAACTCTTGTTTGGATTGAATGCCCTTCATGGGAAGAAAACGGACCCTAAAGACAAGATTCTTTGGGTTGGTGATTGGGACGCAAAAAACGCTCGTGATCTCATGGAGTACACCATCTCAAAGGGTTACCCTGTTGAGTCATATGAGCTTGGAAACGAGTTATGTGGGAGTGGGGTAGGTGCAAGAATAGAAGCTAAACAATATGCCAAAGACATGAAAAAGCTCAAACAACATGTGACAGAGTTGTTCCCAGATGGTAAACAGCCAAAGGTTTTAGGCCCCGGCGGCTCTGAACCCTTATACTCTTTTTTAGTTGTCTTAATCACCTTGTTTAAGTTGCACTCTTTTCAGGGAGCTGCGCTTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGATGATTTTGATTTAGGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATCGGGGCAACAGTTATTACAACATGCTCAGGAGCCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCGCCCCATCAGATATTAGGGGATCGTTGAATACTCTTACACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTCGGGATGTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

413

Amino Acids

45.17

Weight (kDa)

6.44

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	24 - 239	8.5e-87	Glycosyl hydrolase family 79, N-terminal domain
Sugar_tr	PF00083	265 - 411	3.5e-29	Sugar (and other) transporter
MFS_1	PF07690	270 - 403	1.8e-15	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	1125
AciI	CCGC	4 cut(s)	369, 714, 1106, 1140
AclWI	GGATC	3 cut(s)	266, 394, 1168
AcoI	YGGCCR	2 cut(s)	143, 915
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	2 cut(s)	539, 1062
AfiI	CCNNNNNNNGG	2 cut(s)	138, 459
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	5 cut(s)	211, 247, 415, 448, 1168
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	8 cut(s)	59, 101, 188, 577, 623, 652, 785, 894
AluI	AGCT	8 cut(s)	59, 101, 188, 577, 623, 652, 785, 894
Alw26I	GTCTC	1 cut(s)	1130
AlwI	GGATC	3 cut(s)	266, 394, 1168
AoxI	GGCC	5 cut(s)	143, 350, 706, 915, 986
ApeKI	GCWGC	2 cut(s)	785, 803
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	3 cut(s)	350, 472, 707
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	4 cut(s)	512, 745, 1038, 1045
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	145, 917
BauI	CACGAG	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	772, 790
BccI	CCATC	7 cut(s)	335, 384, 551, 677, 825, 1079, 1153
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	1130
BfaI	CTAG	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	714
BisI	GCNGC	3 cut(s)	715, 786, 804
BlsI	GCNGC	3 cut(s)	716, 787, 805
Bme1390I	CCNGG	2 cut(s)	134, 711
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	3 cut(s)	350, 472, 707
BmiI	GGNNCC	3 cut(s)	474, 709, 961
BmrFI	CCNGG	2 cut(s)	134, 711
BmrI	ACTGGG	1 cut(s)	1115
BmsI	GCATC	1 cut(s)	1010
BmtI	GCTAGC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	1115
Bpu10I	CCTNAGC	2 cut(s)	378, 955
BpuMI	CCSGG	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	1130
BsaJI	CCNNGG	5 cut(s)	132, 176, 364, 709, 1186
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 459
Bse1I	ACTGG	1 cut(s)	1121
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	5 cut(s)	132, 176, 364, 709, 1186
BseGI	GGATG	4 cut(s)	400, 836, 880, 1236
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	138, 459
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	60, 392, 969
BseNI	ACTGG	1 cut(s)	1121
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	772, 790
BseYI	CCCAGC	1 cut(s)	851
BshFI	GGCC	5 cut(s)	145, 352, 708, 917, 988
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	3 cut(s)	521, 848, 1103
BslI	CCNNNNNNNGG	2 cut(s)	138, 459
BsmAI	GTCTC	1 cut(s)	1130
BsmFI	GGGAC	3 cut(s)	521, 848, 1103
BsmI	GAATGC	3 cut(s)	27, 242, 454
BsnI	GGCC	5 cut(s)	145, 352, 708, 917, 988
Bso31I	GGTCTC	1 cut(s)	1130
Bsp143I	GATC	5 cut(s)	225, 258, 399, 526, 1160
BspACI	CCGC	4 cut(s)	369, 714, 1106, 1140
BspANI	GGCC	5 cut(s)	145, 352, 708, 917, 988
BspCNI	CTCAG	3 cut(s)	59, 391, 968
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	474, 709, 961
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	266, 394, 1168
BspTNI	GGTCTC	1 cut(s)	1130
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	1121
BssECI	CCNNGG	5 cut(s)	132, 176, 364, 709, 1186
BssMI	GATC	5 cut(s)	225, 258, 399, 526, 1160
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	2 cut(s)	176, 1186
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	940, 1182, 1239
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	46, 378, 955
BstDSI	CCRYGG	1 cut(s)	364
BstEII	GGTNACC	2 cut(s)	554, 1044
BstF5I	GGATG	4 cut(s)	400, 836, 880, 1236
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	5 cut(s)	228, 261, 402, 529, 1163
BstMAI	GTCTC	1 cut(s)	1130
BstMBI	GATC	5 cut(s)	225, 258, 399, 526, 1160
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 518, 714, 794, 803, 848
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	4 cut(s)	24, 665, 954, 1204
BstPI	GGTNACC	2 cut(s)	554, 1044
BstSCI	CCNGG	2 cut(s)	132, 709
BstV1I	GCAGC	2 cut(s)	772, 790
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	145, 352, 708, 917, 988
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	4 cut(s)	400, 836, 880, 1236
BtsIMutI	CAGTG	2 cut(s)	54, 1235
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	790
Cfr13I	GGNCC	3 cut(s)	350, 472, 707
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	538, 1061
CviQI	GTAC	2 cut(s)	538, 1061
DdeI	CTNAG	3 cut(s)	46, 378, 955
DpnI	GATC	5 cut(s)	227, 260, 401, 528, 1162
DpnII	GATC	5 cut(s)	225, 258, 399, 526, 1160
EaeI	YGGCCR	2 cut(s)	143, 915
Eco130I	CCWWGG	2 cut(s)	176, 1186
Eco31I	GGTCTC	1 cut(s)	1130
Eco47I	GGWCC	1 cut(s)	472
Eco91I	GGTNACC	2 cut(s)	554, 1044
EcoO109I	RGGNCCY	1 cut(s)	707
EcoO65I	GGTNACC	2 cut(s)	554, 1044
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	176, 1186
ErhI	CCWWGG	2 cut(s)	176, 1186
FaqI	GGGAC	3 cut(s)	521, 848, 1103
FauNDI	CATATG	2 cut(s)	122, 571
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	1125
Fnu4HI	GCNGC	3 cut(s)	715, 786, 804
FokI	GGATG	3 cut(s)	407, 843, 887
Fsp4HI	GCNGC	3 cut(s)	715, 786, 804
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	3 cut(s)	715, 786, 804
GsaI	CCCAGC	1 cut(s)	855
HaeIII	GGCC	5 cut(s)	145, 352, 708, 917, 988
HapII	CCGG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	790
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	2 cut(s)	487, 566
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	4 cut(s)	512, 745, 1038, 1045
Hpy166II	GTNNAC	4 cut(s)	540, 689, 865, 1126
Hpy188I	TCNGA	6 cut(s)	263, 721, 970, 984, 1135, 1150
Hpy188III	TCNNGA	6 cut(s)	203, 334, 524, 957, 1194, 1228
Hpy8I	GTNNAC	4 cut(s)	540, 689, 865, 1126
HpyAV	CCTTC	2 cut(s)	464, 896
HpyCH4III	ACNGT	3 cut(s)	940, 1182, 1239
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	9 cut(s)	27, 128, 233, 280, 324, 611, 769, 826, 1073
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 518, 714, 794, 803, 848
HpyF3I	CTNAG	3 cut(s)	46, 378, 955
HpySE526I	ACGT	1 cut(s)	271
HspAI	GCGC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	225, 258, 399, 526, 1160
LmnI	GCTCC	2 cut(s)	782, 959
Lsp1109I	GCAGC	2 cut(s)	772, 790
LweI	GCATC	1 cut(s)	1010
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	7 cut(s)	554, 664, 815, 921, 1044, 1108, 1233
MalI	GATC	5 cut(s)	227, 260, 401, 528, 1162
MboI	GATC	5 cut(s)	225, 258, 399, 526, 1160
MboII	GAAGA	3 cut(s)	223, 403, 475
MfeI	CAATTG	2 cut(s)	810, 846
MflI	RGATCY	1 cut(s)	399
MlsI	TGGCCA	2 cut(s)	145, 917
MluCI	AATT	8 cut(s)	115, 192, 264, 288, 298, 810, 846, 1095
MluNI	TGGCCA	2 cut(s)	145, 917
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	962
MnlI	CCTC	4 cut(s)	77, 387, 978, 1190
Mox20I	TGGCCA	2 cut(s)	145, 917
MscI	TGGCCA	2 cut(s)	145, 917
MseI	TTAA	3 cut(s)	198, 749, 762
Msp20I	TGGCCA	2 cut(s)	145, 917
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	2 cut(s)	134, 711
MunI	CAATTG	2 cut(s)	810, 846
Mva1269I	GAATGC	3 cut(s)	27, 242, 454
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	6 cut(s)	239, 518, 714, 794, 803, 848
NciI	CCSGG	1 cut(s)	711
NdeI	CATATG	2 cut(s)	122, 571
NdeII	GATC	5 cut(s)	225, 258, 399, 526, 1160
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	474, 709, 961
NmuCI	GTSAC	4 cut(s)	664, 921, 1044, 1233
NspI	RCATGY	4 cut(s)	24, 665, 954, 1204
PagI	TCATGA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	661
PctI	GAATGC	3 cut(s)	27, 242, 454
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	716, 787, 805
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	2 cut(s)	554, 1044
PspFI	CCCAGC	1 cut(s)	851
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	474, 709, 961
PspPI	GGNCC	3 cut(s)	350, 472, 707
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	539, 1062
RsaNI	GTAC	2 cut(s)	538, 1061
SaqAI	TTAA	3 cut(s)	198, 749, 762
SatI	GCNGC	3 cut(s)	715, 786, 804
Sau3AI	GATC	5 cut(s)	225, 258, 399, 526, 1160
Sau96I	GGNCC	3 cut(s)	350, 472, 707
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	134, 711
SfaNI	GCATC	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	472
Sse9I	AATT	8 cut(s)	115, 192, 264, 288, 298, 810, 846, 1095
SsiI	CCGC	4 cut(s)	369, 714, 1106, 1140
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	132, 709
StyI	CCWWGG	2 cut(s)	176, 1186
TaaI	ACNGT	3 cut(s)	940, 1182, 1239
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	4 cut(s)	8, 69, 82, 95
TasI	AATT	8 cut(s)	115, 192, 264, 288, 298, 810, 846, 1095
TatI	WGTACW	2 cut(s)	537, 1060
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	198, 749, 762
Tru9I	TTAA	3 cut(s)	198, 749, 762
TscAI	CASTG	2 cut(s)	54, 1242
TseFI	GTSAC	4 cut(s)	664, 921, 1044, 1233
TseI	GCWGC	2 cut(s)	785, 803
Tsp45I	GTSAC	4 cut(s)	664, 921, 1044, 1233
TspDTI	ATGAA	5 cut(s)	109, 264, 350, 446, 659
TspGWI	ACGGA	3 cut(s)	353, 485, 887
TspRI	CASTG	2 cut(s)	54, 1242
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	4 cut(s)	24, 665, 954, 1204
XmiI	GTMKAC	1 cut(s)	1125
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.