Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Reverse (-)

35721 .. 38993

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgcttaggcattttgacaaggtcaaaccttcaagcacccccatgatcgtccgtagtcttaatcctgaaaatgatcattttcgtctgaaggatgatgacaaagatgtgctagaggcagaagtgccttacttgagtacaataggcgcattattgtacttagctcaatgcacaggaccggacaactcgtttgcagtgaacttgttaactaagtggtgtcgtttgggtccctcgtcgtctacaggcattgcttcccagcttttcttcttcccttttcctttcactctcattcttggcttcgccgctcaccctactgaatctaacggccaggatttgaagaacaagaccttgatcaatgcagtaaaggcattcaatacaataaggatcagaattggaggttcattgcaagaccaaattatttataattttggttatggagtgaaagactgcaaccaaatcgtgaaagatggttctgggcctttcttgttccgtggcggttgtcttcagccgaaaagatgggatgagatccatgagttcttcaaccaaacacaagccaaactcttgtttggattgaatgcccttcatgggaagaaagcggaccctaaagacaagattctttgggttggtgattgggacgcaaaaaacgctcgtgatctcatggagtacaccatctcaaagggttaccctgttgagtcatatgagcttggaaacgagttatgtgggagtggggtaggtgcaagaatagaagctgaacaatatgccaaagacatgaaaaagctcaaacaacttgtgacagagttgttcccagatgattgtggtttctccaacgaccgagcttcttcgaggacgaccgaactcagaatcgaggatggggcacaactgaagagctatttgatccccaaatctagagtgaaatctgagagaagcaaaacgaaaagcgaaatcaaaaccagagcaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

319

Amino Acids

35.86

Weight (kDa)

8.86

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	3 cut(s)	300, 492, 593
AclWI	GGATC	3 cut(s)	389, 517, 886
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	3 cut(s)	107, 485, 899
AfaI	GTAC	3 cut(s)	136, 155, 662
AfiI	CCNNNNNNNGG	2 cut(s)	582, 954
AgsI	TTSAA	5 cut(s)	33, 334, 370, 538, 571
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	7 cut(s)	161, 256, 700, 746, 775, 833, 885
AluI	AGCT	7 cut(s)	161, 256, 700, 746, 775, 833, 885
AlwI	GGATC	3 cut(s)	389, 517, 886
AoxI	GGCC	2 cut(s)	322, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	4 cut(s)	173, 224, 473, 595
AsuHPI	GGTGA	2 cut(s)	296, 635
AvaII	GGWCC	3 cut(s)	173, 224, 595
BaeGI	GKGCMC	1 cut(s)	874
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	491
BccI	CCATC	4 cut(s)	458, 507, 674, 860
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	2 cut(s)	73, 348
BfaI	CTAG	2 cut(s)	110, 903
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	3 cut(s)	173, 224, 595
BmgT120I	GGNCC	4 cut(s)	173, 224, 473, 595
BmiI	GGNNCC	3 cut(s)	225, 226, 597
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 954
Bse3DI	GCAATG	2 cut(s)	243, 398
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	3 cut(s)	97, 523, 871
BseLI	CCNNNNNNNGG	2 cut(s)	582, 954
BseMI	GCAATG	2 cut(s)	243, 398
BseMII	CTCAG	2 cut(s)	868, 906
BseSI	GKGCMC	1 cut(s)	874
BseYI	CCCAGC	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	829, 849
BshFI	GGCC	2 cut(s)	324, 475
BsiEI	CGRYCG	2 cut(s)	829, 849
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	210, 644
BslI	CCNNNNNNNGG	2 cut(s)	582, 954
BsmFI	GGGAC	2 cut(s)	210, 644
BsmI	GAATGC	2 cut(s)	365, 577
BsnI	GGCC	2 cut(s)	324, 475
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
BspACI	CCGC	3 cut(s)	300, 492, 593
BspANI	GGCC	2 cut(s)	324, 475
BspCNI	CTCAG	2 cut(s)	867, 907
BspLI	GGNNCC	3 cut(s)	225, 226, 597
BspPI	GGATC	3 cut(s)	389, 517, 886
BspQI	GCTCTTC	1 cut(s)	875
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	243, 398
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	875
BstDEI	CTNAG	5 cut(s)	5, 157, 207, 854, 915
BstDSI	CCRYGG	1 cut(s)	487
BstEII	GGTNACC	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	97, 523, 871
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	7 cut(s)	48, 76, 351, 384, 525, 652, 894
BstMBI	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
BstMCI	CGRYCG	2 cut(s)	829, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 641
BstNI	CCWGG	1 cut(s)	326
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	874
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	324, 475
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	97, 523, 871
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	173, 224, 473, 595
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	135, 154, 661
CviAII	CATG	5 cut(s)	43, 527, 581, 655, 766
CviQI	GTAC	3 cut(s)	135, 154, 661
DdeI	CTNAG	5 cut(s)	5, 157, 207, 854, 915
DpnI	GATC	7 cut(s)	47, 75, 350, 383, 524, 651, 893
DpnII	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
Eco47I	GGWCC	3 cut(s)	173, 224, 595
Eco57I	CTGAAG	3 cut(s)	107, 485, 899
Eco91I	GGTNACC	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	5 cut(s)	46, 530, 584, 658, 769
FaqI	GGGAC	2 cut(s)	210, 644
FatI	CATG	5 cut(s)	42, 526, 580, 654, 765
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	2 cut(s)	73, 348
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	3 cut(s)	104, 530, 878
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	110, 903
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	324, 475
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	5 cut(s)	46, 530, 584, 658, 769
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	4 cut(s)	314, 610, 689, 858
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	296, 635
Hpy166II	GTNNAC	4 cut(s)	196, 204, 237, 663
Hpy188I	TCNGA	4 cut(s)	87, 386, 857, 916
Hpy188III	TCNNGA	4 cut(s)	65, 457, 647, 903
Hpy8I	GTNNAC	4 cut(s)	196, 204, 237, 663
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	39, 82, 587
HpyCH4V	TGCA	6 cut(s)	168, 191, 356, 403, 447, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 641
HpyF3I	CTNAG	5 cut(s)	5, 157, 207, 854, 915
Hsp92II	CATG	5 cut(s)	46, 530, 584, 658, 769
HspAI	GCGC	1 cut(s)	144
KflI	GGGWCCC	1 cut(s)	224
Ksp22I	TGATCA	2 cut(s)	73, 348
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
LguI	GCTCTTC	1 cut(s)	875
MaeI	CTAG	2 cut(s)	110, 903
MaeIII	GTNAC	2 cut(s)	677, 787
MalI	GATC	7 cut(s)	47, 75, 350, 383, 524, 651, 893
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
MboII	GAAGA	8 cut(s)	253, 256, 346, 491, 526, 598, 828, 892
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	874
MluCI	AATT	3 cut(s)	387, 411, 421
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	5 cut(s)	106, 238, 386, 834, 856
MseI	TTAA	2 cut(s)	60, 203
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	2 cut(s)	365, 577
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	362, 641
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
NlaIII	CATG	5 cut(s)	46, 530, 584, 658, 769
NlaIV	GGNNCC	3 cut(s)	225, 226, 597
NmuCI	GTSAC	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	875
PctI	GAATGC	2 cut(s)	365, 577
PfeI	GAWTC	3 cut(s)	314, 610, 858
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	677
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	225, 226, 597
PspPI	GGNCC	4 cut(s)	173, 224, 473, 595
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	522
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	3 cut(s)	136, 155, 662
RsaNI	GTAC	3 cut(s)	135, 154, 661
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	875
SaqAI	TTAA	2 cut(s)	60, 203
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	7 cut(s)	45, 73, 348, 381, 522, 649, 891
Sau96I	GGNCC	4 cut(s)	173, 224, 473, 595
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	874
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	3 cut(s)	173, 224, 595
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	3 cut(s)	387, 411, 421
SsiI	CCGC	3 cut(s)	300, 492, 593
SspMI	CTAG	2 cut(s)	110, 903
StyD4I	CCNGG	1 cut(s)	324
TaqI	TCGA	2 cut(s)	839, 861
TaqII	GACCGA	2 cut(s)	843, 863
TasI	AATT	3 cut(s)	387, 411, 421
TatI	WGTACW	3 cut(s)	134, 153, 660
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	314, 610, 858
Tru1I	TTAA	2 cut(s)	60, 203
Tru9I	TTAA	2 cut(s)	60, 203
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	787
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	3 cut(s)	387, 569, 782
TspGWI	ACGGA	2 cut(s)	41, 476
TspRI	CASTG	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	173, 224, 595
XbaI	TCTAGA	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	2 cut(s)	110, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.