Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

1170859 .. 1176013

Gene Structure 5155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCCGAGGACATCATTGGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTTGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGTTATGCTTGCCAATGGAACAGAAAAAGCCCATCTATACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

5.35

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	7 - 55	5.2e-06	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	26, 41
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	125
BccI	CCATC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	64, 127
BsaJI	CCNNGG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	76
BspACI	CCGC	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	64, 127
BspT107I	GGYRCC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	76, 112
BstAUI	TGTACA	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	3 cut(s)	65, 149, 193
CviKI_1	RGCY	3 cut(s)	65, 149, 193
CviQI	GTAC	1 cut(s)	77
FaiI	YATR	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	160
HpaI	GTTAAC	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	20, 24
HpyCH4III	ACNGT	2 cut(s)	76, 112
KspAI	GTTAAC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	73, 111, 122, 128
MluCI	AATT	2 cut(s)	41, 105
MnlI	CCTC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	64, 127
NmeAIII	GCCGAG	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	64, 127
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	147
SetI	ASST	3 cut(s)	100, 131, 141
SgeI	CNNG	8 cut(s)	18, 79, 92, 100, 110, 149, 155, 184
Sse9I	AATT	2 cut(s)	41, 105
SsiI	CCGC	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	76, 112
TasI	AATT	2 cut(s)	41, 105
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.