Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

4458703 .. 4460119

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGCCTTCGAGACCTCCAGCGGTACAACCTTGAGGAATGCTTTCGATAATGTCCTTTCCTTGTTCATCCTCATCCTGAACATAAAGCCACCGAGCACAGCCTCAATCAGTTTGCAGATTCAGTATATACCGCAGCATTTGGTGAGACTGTTGCAAATTATTGTGGACGGTAACTGCGACATGGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTGGAAAGAACTGGTTACCTCATGAGCCAGATGAGCAGAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAGGTTCCCCCATTGTTAAGGGTACAACTGGGTGAGTTCCTAAAGACAATTATTTATGTCGATTACCCTGAGCGGTGGCCACGACTTTTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

6.06

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	40 - 106	4.8e-12	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	3 cut(s)	24, 134, 397
AcoI	YGGCCR	1 cut(s)	401
AfaI	GTAC	3 cut(s)	28, 192, 348
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	2 cut(s)	101, 306
Alw26I	GTCTC	2 cut(s)	8, 142
AoxI	GGCC	2 cut(s)	6, 401
ApeKI	GCWGC	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	157, 368
BalI	TGGCCA	1 cut(s)	403
Bbv12I	GWGCWC	2 cut(s)	101, 306
BbvI	GCAGC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	8, 142
BfaI	CTAG	1 cut(s)	418
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	242, 357
BseGI	GGATG	3 cut(s)	69, 75, 207
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	242, 357
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	2 cut(s)	8, 403
BsiHKAI	GWGCWC	2 cut(s)	101, 306
BsmAI	GTCTC	2 cut(s)	8, 142
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	8, 403
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	101, 306
BspACI	CCGC	3 cut(s)	24, 134, 397
BspANI	GGCC	2 cut(s)	8, 403
BspCNI	CTCAG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	242, 357
Bst4CI	ACNGT	2 cut(s)	153, 173
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	69, 75, 207
BstMAI	GTCTC	2 cut(s)	8, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	8, 403
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	69, 75, 207
Cac8I	GCNNGC	1 cut(s)	205
CciI	TCATGA	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	27, 191, 347
CviAII	CATG	2 cut(s)	184, 248
CviJI	RGCY	6 cut(s)	8, 91, 104, 253, 281, 403
CviKI_1	RGCY	6 cut(s)	8, 91, 104, 253, 281, 403
CviQI	GTAC	3 cut(s)	27, 191, 347
DdeI	CTNAG	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	240
EcoO65I	GGTNACC	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	273
FaeI	CATG	2 cut(s)	187, 251
FaiI	YATR	6 cut(s)	86, 129, 131, 185, 249, 381
FatI	CATG	2 cut(s)	183, 247
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	3 cut(s)	56, 62, 194
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	418
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	2 cut(s)	8, 403
Hin1II	CATG	2 cut(s)	187, 251
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	2 cut(s)	157, 368
Hpy166II	GTNNAC	2 cut(s)	169, 191
Hpy188III	TCNNGA	4 cut(s)	13, 79, 217, 248
Hpy8I	GTNNAC	2 cut(s)	169, 191
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	153, 173
HpyCH4IV	ACGT	3 cut(s)	193, 291, 306
HpyCH4V	TGCA	2 cut(s)	118, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	3 cut(s)	193, 291, 306
Hsp92II	CATG	2 cut(s)	187, 251
LpnPI	CCDG	9 cut(s)	34, 92, 182, 217, 223, 267, 311, 338, 405
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	418
MaeII	ACGT	3 cut(s)	193, 291, 306
MaeIII	GTNAC	3 cut(s)	173, 240, 319
MbiI	CCGCTC	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	101, 306
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	2 cut(s)	159, 372
MluNI	TGGCCA	1 cut(s)	403
MnlI	CCTC	5 cut(s)	28, 30, 83, 115, 255
Mox20I	TGGCCA	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	187, 251
NlaIV	GGNNCC	1 cut(s)	330
PagI	TCATGA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	330
RsaI	GTAC	3 cut(s)	28, 192, 348
RsaNI	GTAC	3 cut(s)	27, 191, 347
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	101, 306
SetI	ASST	9 cut(s)	20, 35, 196, 201, 247, 283, 294, 309, 330
SfaNI	GCATC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	159, 372
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	24, 134, 397
SspMI	CTAG	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	153, 173
TaiI	ACGT	3 cut(s)	196, 294, 309
TaqI	TCGA	3 cut(s)	12, 48, 384
TasI	AATT	2 cut(s)	159, 372
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	58, 214
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.