RchiOBHm_Chr1g0330851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002487
Physical Location & Seq
Reverse (-)
20590304 .. 20594637
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGATTCTGAAGCAGAAGCTCTTGAGGAGAAGCTGACGTCTTTGTTTGGTCAGCTCCGAGCTGAGTGTGCTATTCTTGAAAGAGTGGTCTACAAGAACAAGAACCAGCATAGACGTTCCTCGTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGGTGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACATCTTTTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTGCATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTACTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTAAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTGGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACAAAAGAGCCAGATTGCAGTGTCAGGGCACACTTCTGCGGCGGGTAGGTTTGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

232

Amino Acids

26.69

Weight (kDa)

9.55

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 10 - 163 4e-15 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 677, 680
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 2 cut(s) 125, 134
AfiI CCNNNNNNNGG 1 cut(s) 142
AflII CTTAAG 1 cut(s) 553
AgsI TTSAA 6 cut(s) 80, 262, 344, 355, 455, 487
AluBI AGCT 6 cut(s) 20, 34, 55, 62, 317, 425
AluI AGCT 6 cut(s) 20, 34, 55, 62, 317, 425
Alw26I GTCTC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 198, 317, 359
ApoI RAATTY 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 185, 304, 346
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 553
BisI GCNGC 4 cut(s) 199, 318, 360, 678
BlsI GCNGC 4 cut(s) 200, 319, 361, 679
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 614
BpuEI CTTGAG 2 cut(s) 44, 650
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 220
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 130, 223
Bse3DI GCAATG 1 cut(s) 377
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 130, 223
BseRI GAGGAG 2 cut(s) 41, 200
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 3 cut(s) 185, 304, 346
BsgI GTGCAG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 2 cut(s) 677, 680
BspCNI CTCAG 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 2 cut(s) 130, 223
BssMI GATC 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 63, 177, 421
BstENI CCTNNNNNAGG 1 cut(s) 140
BstKTI GATC 1 cut(s) 392
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 185, 304, 346
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 216, 663
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 463
Csp6I GTAC 2 cut(s) 124, 133
CviAII CATG 3 cut(s) 298, 400, 490
CviQI GTAC 2 cut(s) 124, 133
DdeI CTNAG 3 cut(s) 63, 177, 421
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 372
FaeI CATG 3 cut(s) 301, 403, 493
FaiI YATR 5 cut(s) 111, 291, 299, 401, 491
FatI CATG 3 cut(s) 297, 399, 489
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 199, 318, 360, 678
Fsp4HI GCNGC 4 cut(s) 199, 318, 360, 678
GluI GCNGC 4 cut(s) 199, 318, 360, 678
GsuI CTGGAG 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 301, 403, 493
HinfI GANTC 3 cut(s) 5, 405, 460
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 10, 59, 369, 613
Hpy188III TCNNGA 4 cut(s) 23, 77, 536, 593
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 136, 349, 533
HpyCH4IV ACGT 2 cut(s) 38, 115
HpyCH4V TGCA 5 cut(s) 244, 320, 377, 434, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
HpyF3I CTNAG 3 cut(s) 63, 177, 421
HpySE526I ACGT 2 cut(s) 38, 115
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 301, 403, 493
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 2 cut(s) 60, 314
LpnPI CCDG 8 cut(s) 119, 143, 204, 296, 368, 578, 648, 662
Lsp1109I GCAGC 3 cut(s) 185, 304, 346
LweI GCATC 1 cut(s) 253
MaeII ACGT 2 cut(s) 38, 115
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 3 cut(s) 274, 279, 489
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 2 cut(s) 292, 617
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 19, 130, 144, 153, 178, 541, 571, 627
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 2 cut(s) 525, 554
MspCI CTTAAG 1 cut(s) 553
MwoI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
NdeII GATC 1 cut(s) 389
NlaIII CATG 3 cut(s) 301, 403, 493
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 5, 405, 460
PkrI GCNGC 4 cut(s) 200, 319, 361, 679
PstNI CAGNNNCTG 1 cut(s) 463
RsaI GTAC 2 cut(s) 125, 134
RsaNI GTAC 2 cut(s) 124, 133
SaqAI TTAA 2 cut(s) 525, 554
SatI GCNGC 4 cut(s) 199, 318, 360, 678
Sau3AI GATC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 1 cut(s) 253
SmlI CTYRAG 3 cut(s) 23, 553, 629
SmoI CTYRAG 3 cut(s) 23, 553, 629
Sse9I AATT 2 cut(s) 292, 617
SsiI CCGC 2 cut(s) 677, 680
TaiI ACGT 2 cut(s) 41, 118
TaqI TCGA 2 cut(s) 388, 442
TasI AATT 2 cut(s) 292, 617
TauI GCSGC 1 cut(s) 680
TfiI GAWTC 3 cut(s) 5, 405, 460
Tru1I TTAA 2 cut(s) 525, 554
Tru9I TTAA 2 cut(s) 525, 554
TscAI CASTG 2 cut(s) 223, 663
TseI GCWGC 3 cut(s) 198, 317, 359
TspDTI ATGAA 3 cut(s) 155, 286, 388
TspRI CASTG 2 cut(s) 223, 663
Vha464I CTTAAG 1 cut(s) 553
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 306
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.