RchiOBHm_Chr1g0380221

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001091
Physical Location & Seq
Forward (+)
65953062 .. 65957149
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
ATGGATCCACAGAATCCAGCAGAAAAGCGATTCTCACTGCGCAATGACAAACAAAGTAGCATTGCAAAGAACAAGAGCAGCAAAGTCACACTTCAAGATATTCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAACAGAGATGAAGTCATCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGAGTTTACAAAACTGGTATGGCAGAAACTGGAAGAAGAAAATGGAGAATTTTTCAAGGCCTACCACCTAAGGCTAAAGCTCAAAGATCAAATTCATATGTATAACCAGTTGCTTGAGCAGCAATACCATCTGATGAAACAGCAAGAGCGTGCAGAGTTTGAGATAGCTCCTGTGCAGAATGGAATGCATCACATGCCTGGTTATTTCGGGATCAATTCCATGGCCACCATATCTGGTTGTCATGGAGTTAATGGAATACCTGCTCCAGGAAACTTCCACCGTATGCAACATAAGTGTGCGAAAGAAAGAAGTCCAGCTAATACAGTACCTTTCTTCCCTGCTGGTGATATGAAGTTAGATGGGGCTTCAAGTCCTGTAGCAGTGGCATTGAATGGACAATTTTCCTTCACTCCTGAAACATCAGGGCTAAATCTGGACACACCAGTGCTTGACTCTGCATTTACTTCTGATATAGCAAATCTAGAGAGGTTGCGTCTTGGAGCAGATGGTCAGAACACATGTCCTGAGGAGTCACTTCAATCATCGGATCAGATGACTTGGGATTTTGGCTTCTCTAATACCGCTGAATGGTCAAACTTTCAAGAGTTTGGACCAGCGGGGAACTATTCAGGCTCAGAGTTTCAACCTTCTCAGTTGGATATTAATCTTGATTCTGCAGAGCAAAATGACATGGTTGATGGGTTCCTTCTCGATGGTCCACCTGGTCAAGGCACTCAACCTGCAGAGGAAACTAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

319

Amino Acids

35.78

Weight (kDa)

4.9

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 37 - 88 1.5e-25 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
Acc36I ACCTGC 2 cut(s) 466, 946
AciI CCGC 2 cut(s) 780, 815
AclWI GGATC 3 cut(s) 12, 416, 753
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 115, 245, 288
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 3 cut(s) 464, 786, 926
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 9 cut(s) 95, 104, 125, 253, 567, 589, 737, 800, 842
AjnI CCWGG 3 cut(s) 394, 463, 919
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 3 cut(s) 277, 365, 515
AluI AGCT 3 cut(s) 277, 365, 515
AlwI GGATC 3 cut(s) 12, 416, 753
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 2 cut(s) 255, 420
ApeKI GCWGC 2 cut(s) 78, 316
ApoI RAATTY 3 cut(s) 115, 245, 288
AseI ATTAAT 1 cut(s) 861
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 809, 914
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 2 cut(s) 809, 914
AxyI CCTNAGG 2 cut(s) 266, 723
BalI TGGCCA 1 cut(s) 422
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 90, 328
BccI CCATC 5 cut(s) 333, 551, 698, 890, 905
BciT130I CCWGG 3 cut(s) 396, 465, 921
BfaI CTAG 2 cut(s) 186, 680
BfmI CTRYAG 4 cut(s) 134, 573, 873, 939
BfuAI ACCTGC 2 cut(s) 466, 946
BisI GCNGC 2 cut(s) 79, 317
BlsI GCNGC 2 cut(s) 80, 318
Bme1390I CCNGG 3 cut(s) 396, 465, 921
Bme18I GGWCC 2 cut(s) 809, 914
BmgT120I GGNCC 2 cut(s) 809, 914
BmiI GGNNCC 2 cut(s) 6, 902
BmrFI CCNGG 3 cut(s) 396, 465, 921
BmsI GCATC 1 cut(s) 394
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 3 cut(s) 464, 786, 926
Bse1I ACTGG 4 cut(s) 216, 231, 304, 641
Bse21I CCTNAGG 2 cut(s) 266, 723
Bse3DI GCAATG 2 cut(s) 49, 60
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 3 cut(s) 396, 465, 921
BseDI CCNNGG 1 cut(s) 417
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 3 cut(s) 464, 786, 926
BseMI GCAATG 2 cut(s) 49, 60
BseMII CTCAG 4 cut(s) 189, 714, 846, 863
BseNI ACTGG 4 cut(s) 216, 231, 304, 641
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 2 cut(s) 90, 328
BsgI GTGCAG 2 cut(s) 369, 392
BshFI GGCC 2 cut(s) 257, 422
BslI CCNNNNNNNGG 3 cut(s) 464, 786, 926
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 257, 422
Bsp143I GATC 5 cut(s) 4, 178, 283, 408, 745
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 2 cut(s) 780, 815
BspANI GGCC 2 cut(s) 257, 422
BspCNI CTCAG 4 cut(s) 190, 715, 845, 862
BspLI GGNNCC 2 cut(s) 6, 902
BspMAI CTGCAG 3 cut(s) 138, 877, 943
BspMI ACCTGC 2 cut(s) 466, 946
BspPI GGATC 3 cut(s) 12, 416, 753
BsrDI GCAATG 2 cut(s) 49, 60
BsrI ACTGG 4 cut(s) 216, 231, 304, 641
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 5 cut(s) 4, 178, 283, 408, 745
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 396, 465, 921
Bst4CI ACNGT 2 cut(s) 479, 523
BstAPI GCANNNNNTGC 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 7 cut(s) 175, 198, 266, 723, 832, 849, 951
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 2 cut(s) 462, 924
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 7, 181, 286, 411, 748
BstMBI GATC 5 cut(s) 4, 178, 283, 408, 745
BstMWI GCNNNNNNNGC 2 cut(s) 316, 391
BstNI CCWGG 3 cut(s) 396, 465, 921
BstNSI RCATGY 2 cut(s) 394, 720
BstSCI CCNGG 3 cut(s) 394, 463, 919
BstSFI CTRYAG 4 cut(s) 134, 573, 873, 939
BstV1I GCAGC 2 cut(s) 90, 328
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 2 cut(s) 266, 723
BsuRI GGCC 2 cut(s) 257, 422
BtgI CCRYGG 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 35, 585
BtsIMutI CAGTG 3 cut(s) 35, 585, 648
BveI ACCTGC 2 cut(s) 466, 946
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 809, 914
CseI GACGC 1 cut(s) 680
CsiI ACCWGGT 1 cut(s) 919
Csp6I GTAC 1 cut(s) 524
CviAII CATG 5 cut(s) 391, 418, 440, 717, 889
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 7 cut(s) 175, 198, 266, 723, 832, 849, 951
DpnI GATC 5 cut(s) 6, 180, 285, 410, 747
DpnII GATC 5 cut(s) 4, 178, 283, 408, 745
EaeI YGGCCR 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 809, 914
Eco81I CCTNAGG 2 cut(s) 266, 723
EcoNI CCTNNNNNAGG 2 cut(s) 462, 924
EcoRII CCWGG 3 cut(s) 394, 463, 919
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 394, 421, 443, 720, 892
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 5 cut(s) 390, 417, 439, 716, 888
FauI CCCGC 1 cut(s) 808
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 79, 317
Fsp4HI GCNGC 2 cut(s) 79, 317
FspBI CTAG 2 cut(s) 186, 680
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 79, 317
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 257, 422
HgaI GACGC 1 cut(s) 680
HhaI GCGC 1 cut(s) 42
Hin1II CATG 5 cut(s) 394, 421, 443, 720, 892
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 5 cut(s) 13, 30, 650, 728, 869
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 204, 917
Hpy188I TCNGA 6 cut(s) 330, 667, 711, 745, 750, 835
Hpy8I GTNNAC 2 cut(s) 204, 917
HpyAV CCTTC 3 cut(s) 613, 855, 914
HpyCH4III ACNGT 2 cut(s) 479, 523
HpyCH4V TGCA 9 cut(s) 65, 136, 350, 373, 385, 484, 656, 875, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 391
HpyF3I CTNAG 7 cut(s) 175, 198, 266, 723, 832, 849, 951
Hsp92II CATG 5 cut(s) 394, 421, 443, 720, 892
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 4, 178, 283, 408, 745
LmnI GCTCC 3 cut(s) 370, 466, 698
Lsp1109I GCAGC 2 cut(s) 90, 328
LweI GCATC 1 cut(s) 394
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 2 cut(s) 186, 680
MaeIII GTNAC 2 cut(s) 85, 729
MalI GATC 5 cut(s) 6, 180, 285, 410, 747
MboI GATC 5 cut(s) 4, 178, 283, 408, 745
MboII GAAGA 3 cut(s) 242, 245, 523
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 5 cut(s) 115, 245, 288, 412, 596
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 2 cut(s) 644, 737
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 4 cut(s) 182, 678, 718, 937
Mox20I TGGCCA 1 cut(s) 422
Mph1103I ATGCAT 1 cut(s) 387
MscI TGGCCA 1 cut(s) 422
MseI TTAA 2 cut(s) 447, 861
MslI CAYNNNNRTG 2 cut(s) 492, 641
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 782, 815
MspR9I CCNGG 3 cut(s) 396, 465, 921
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 3 cut(s) 396, 465, 921
MwoI GCNNNNNNNGC 2 cut(s) 316, 391
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 294
NdeII GATC 5 cut(s) 4, 178, 283, 408, 745
NlaIII CATG 5 cut(s) 394, 421, 443, 720, 892
NlaIV GGNNCC 2 cut(s) 6, 902
NmuCI GTSAC 2 cut(s) 85, 729
NsbI TGCGCA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 2 cut(s) 394, 720
OliI CACNNNNGTG 1 cut(s) 641
PceI AGGCCT 1 cut(s) 257
PciI ACATGT 1 cut(s) 716
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 13, 30, 869
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 2 cut(s) 80, 318
PleI GAGTC 2 cut(s) 644, 736
PpsI GAGTC 2 cut(s) 644, 736
PscI ACATGT 1 cut(s) 716
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 3 cut(s) 394, 463, 919
PspGI CCWGG 3 cut(s) 394, 463, 919
PspN4I GGNNCC 2 cut(s) 6, 902
PspPI GGNCC 2 cut(s) 809, 914
PstI CTGCAG 3 cut(s) 138, 877, 943
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 2 cut(s) 492, 641
SaqAI TTAA 2 cut(s) 447, 861
SatI GCNGC 2 cut(s) 79, 317
Sau3AI GATC 5 cut(s) 4, 178, 283, 408, 745
Sau96I GGNCC 2 cut(s) 809, 914
SchI GAGTC 2 cut(s) 644, 737
ScrFI CCNGG 3 cut(s) 396, 465, 921
SexAI ACCWGGT 1 cut(s) 919
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 4 cut(s) 134, 573, 873, 939
SinI GGWCC 2 cut(s) 809, 914
SmiMI CAYNNNNRTG 2 cut(s) 492, 641
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 115, 245, 288, 412, 596
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 2 cut(s) 780, 815
SspMI CTAG 2 cut(s) 186, 680
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 394, 463, 919
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 479, 523
TaqI TCGA 1 cut(s) 909
TasI AATT 5 cut(s) 115, 245, 288, 412, 596
TfiI GAWTC 3 cut(s) 13, 30, 869
Tru1I TTAA 2 cut(s) 447, 861
Tru9I TTAA 2 cut(s) 447, 861
TscAI CASTG 3 cut(s) 42, 585, 648
TseFI GTSAC 2 cut(s) 85, 729
TseI GCWGC 2 cut(s) 78, 316
Tsp45I GTSAC 2 cut(s) 85, 729
TspDTI ATGAA 5 cut(s) 161, 171, 281, 347, 563
TspRI CASTG 3 cut(s) 42, 585, 648
VpaK11BI GGWCC 2 cut(s) 809, 914
VspI ATTAAT 1 cut(s) 861
XagI CCTNNNNNAGG 2 cut(s) 462, 924
XapI RAATTY 3 cut(s) 115, 245, 288
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 2 cut(s) 394, 720
XspI CTAG 2 cut(s) 186, 680
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.