RchiOBHm_Chr1g0381871

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001021
Physical Location & Seq
Forward (+)
67012617 .. 67017613
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGGCAGACGCTTATTGGAGGTACAGCGACGGACGGCAGCCGCCTCCGTCGGGGATGAATTCCGGCATGGGGAAGCGCCCGCGTCCCGATTACGATTCCCATAGTGGCCATGACCTGCCTGGTTATTATCCCCATGAAGATGATAGAGGTTCACTCCGTGCGATGAGAGATACAGACTCCATTAACGCATCATATGATCGCTACCTGCGTTCTGCGCAAATGTCATCTTATAGTGGGGGACAGTCTGCTAGAAACATGAGCGGGGGACTACCTGGTCGTTCTGTTGATGACCCACGAATGATGGGAATGGTTGAACCTGGGCCTGTAAAAGAGAGGGTCTTGGGATTGGGAAGTGGGAGGCCTGAGGTTCCCCTTCCTCCTGGTGCTACCAGTACACTTTTTGTGGAAGGATTGCCTGCCAACTGTACACGACGTGAAGTAGCTCACATCTTTCGCCCATTTGTTGGCTACAAAGAAGTGAGACTCGTAAGCAAGGAATCAAGACATCCTGGAGGTGAACCTTTGGTACTTTGTTTTGTTGATTTTATGAGCCCTGCCCATGCAGCCACTGCTATGGATGCCTTGCAAGGTTATACGTTCGATGAGCATGACCGGGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTATCCTGGTGCAAGGTCAGGAGGGGGGCACCGAGGGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

230

Amino Acids

25.29

Weight (kDa)

8.88

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 133 - 203 2.2e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 216
Acc36I ACCTGC 2 cut(s) 123, 213
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 41, 80, 261
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 58
AdeI CACNNNGTG 2 cut(s) 158, 434
AfaI GTAC 4 cut(s) 23, 394, 427, 528
AfiI CCNNNNNNNGG 4 cut(s) 50, 69, 464, 619
AgsI TTSAA 1 cut(s) 314
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 6 cut(s) 118, 271, 316, 379, 508, 652
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 3 cut(s) 106, 320, 359
ApeKI GCWGC 2 cut(s) 37, 563
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 2 cut(s) 78, 217
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 678
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 554
BbvI GCAGC 2 cut(s) 49, 575
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 6 cut(s) 120, 273, 318, 381, 510, 654
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 2 cut(s) 123, 213
BisI GCNGC 3 cut(s) 38, 41, 564
BlsI GCNGC 3 cut(s) 39, 42, 565
Bme1390I CCNGG 7 cut(s) 120, 273, 318, 381, 510, 614, 654
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 369, 677
BmrFI CCNGG 7 cut(s) 120, 273, 318, 381, 510, 614, 654
BmsI GCATC 2 cut(s) 197, 568
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpmI CTGGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 614
BsaJI CCNNGG 2 cut(s) 317, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 69, 464, 619
Bse1I ACTGG 1 cut(s) 390
Bse21I CCTNAGG 1 cut(s) 363
BseBI CCWGG 6 cut(s) 120, 273, 318, 381, 510, 654
BseDI CCNNGG 2 cut(s) 317, 679
BseGI GGATG 3 cut(s) 60, 505, 583
BseLI CCNNNNNNNGG 4 cut(s) 50, 69, 464, 619
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 2 cut(s) 49, 575
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 108, 322, 361
BshNI GGYRCC 1 cut(s) 675
BsiSI CCGG 2 cut(s) 63, 613
BslFI GGGAC 4 cut(s) 69, 252, 279, 629
BslI CCNNNNNNNGG 4 cut(s) 50, 69, 464, 619
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 4 cut(s) 69, 252, 279, 629
BsnI GGCC 3 cut(s) 108, 322, 361
Bsp1286I GDGCHC 2 cut(s) 554, 678
Bsp1407I TGTACA 1 cut(s) 425
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 3 cut(s) 41, 80, 261
BspANI GGCC 3 cut(s) 108, 322, 361
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 369, 677
BspMI ACCTGC 2 cut(s) 123, 213
BspT107I GGYRCC 1 cut(s) 675
BsrBI CCGCTC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 425
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 317, 679
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 6 cut(s) 120, 273, 318, 381, 510, 654
Bst4CI ACNGT 2 cut(s) 243, 425
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 80, 417, 646
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 3 cut(s) 60, 505, 583
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 217
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 4 cut(s) 214, 563, 569, 578
BstNI CCWGG 6 cut(s) 120, 273, 318, 381, 510, 654
BstSCI CCNGG 7 cut(s) 118, 271, 316, 379, 508, 612, 652
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 49, 575
BstXI CCANNNNNNTGG 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 108, 322, 361
BtgZI GCGATG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 3 cut(s) 60, 505, 583
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 2 cut(s) 123, 213
Cac8I GCNNGC 3 cut(s) 80, 417, 646
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 2 cut(s) 78, 217
Cfr13I GGNCC 1 cut(s) 320
CseI GACGC 2 cut(s) 17, 71
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 4 cut(s) 22, 393, 426, 527
CviAII CATG 6 cut(s) 67, 110, 134, 256, 560, 608
CviJI RGCY 8 cut(s) 40, 108, 322, 361, 443, 468, 552, 566
CviKI_1 RGCY 8 cut(s) 40, 108, 322, 361, 443, 468, 552, 566
CviQI GTAC 4 cut(s) 22, 393, 426, 527
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 2 cut(s) 158, 434
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 106
Eco147I AGGCCT 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 6 cut(s) 118, 271, 316, 379, 508, 652
EcoT38I GRGCYC 1 cut(s) 554
FaeI CATG 6 cut(s) 70, 113, 137, 259, 563, 611
FaqI GGGAC 4 cut(s) 69, 252, 279, 629
FatI CATG 6 cut(s) 66, 109, 133, 255, 559, 607
FauI CCCGC 2 cut(s) 87, 254
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 38, 41, 564
FokI GGATG 3 cut(s) 67, 492, 590
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 3 cut(s) 38, 41, 564
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 2 cut(s) 77, 216
GluI GCNGC 3 cut(s) 38, 41, 564
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 3 cut(s) 108, 322, 361
HapII CCGG 2 cut(s) 63, 613
HgaI GACGC 2 cut(s) 17, 71
HhaI GCGC 2 cut(s) 78, 217
Hin1II CATG 6 cut(s) 70, 113, 137, 259, 563, 611
Hin6I GCGC 2 cut(s) 76, 215
HinP1I GCGC 2 cut(s) 76, 215
HinfI GANTC 5 cut(s) 95, 176, 483, 497, 617
HpaII CCGG 2 cut(s) 63, 613
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 4 cut(s) 152, 395, 428, 518
Hpy188III TCNNGA 3 cut(s) 86, 501, 666
Hpy8I GTNNAC 4 cut(s) 152, 395, 428, 518
Hpy99I CGWCG 3 cut(s) 32, 52, 435
HpyAV CCTTC 2 cut(s) 383, 401
HpyCH4III ACNGT 2 cut(s) 243, 425
HpyCH4IV ACGT 2 cut(s) 433, 596
HpyCH4V TGCA 4 cut(s) 563, 586, 637, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 563, 569, 578
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 433, 596
Hsp92II CATG 6 cut(s) 70, 113, 137, 259, 563, 611
HspAI GCGC 2 cut(s) 76, 215
Kzo9I GATC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 49, 575
LweI GCATC 2 cut(s) 197, 568
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 249
MaeII ACGT 2 cut(s) 433, 596
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 261
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 554, 678
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 58, 625, 638
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 3 cut(s) 170, 477, 611
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 183, 629
MslI CAYNNNNRTG 2 cut(s) 138, 572
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 2 cut(s) 63, 613
MspR9I CCNGG 7 cut(s) 120, 273, 318, 381, 510, 614, 654
MvaI CCWGG 6 cut(s) 120, 273, 318, 381, 510, 654
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 214, 563, 569, 578
NciI CCSGG 1 cut(s) 614
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 196
NlaIII CATG 6 cut(s) 70, 113, 137, 259, 563, 611
NlaIV GGNNCC 2 cut(s) 369, 677
NsbI TGCGCA 1 cut(s) 216
PceI AGGCCT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 2 cut(s) 95, 497
PflFI GACNNNGTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 3 cut(s) 39, 42, 565
PleI GAGTC 3 cut(s) 170, 477, 611
PpsI GAGTC 3 cut(s) 170, 477, 611
Psp6I CCWGG 6 cut(s) 118, 271, 316, 379, 508, 652
PspGI CCWGG 6 cut(s) 118, 271, 316, 379, 508, 652
PspN4I GGNNCC 2 cut(s) 369, 677
PspPI GGNCC 1 cut(s) 320
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstNI CAGNNNCTG 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 4 cut(s) 23, 394, 427, 528
RsaNI GTAC 4 cut(s) 22, 393, 426, 527
RseI CAYNNNNRTG 2 cut(s) 138, 572
SaqAI TTAA 2 cut(s) 183, 629
SatI GCNGC 3 cut(s) 38, 41, 564
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 3 cut(s) 170, 477, 611
ScrFI CCNGG 7 cut(s) 120, 273, 318, 381, 510, 614, 654
SduI GDGCHC 2 cut(s) 554, 678
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 2 cut(s) 197, 568
SmiMI CAYNNNNRTG 2 cut(s) 138, 572
Sse9I AATT 3 cut(s) 58, 625, 638
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 3 cut(s) 41, 80, 261
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 7 cut(s) 118, 271, 316, 379, 508, 612, 652
TaaI ACNGT 2 cut(s) 243, 425
TaiI ACGT 2 cut(s) 436, 599
TaqI TCGA 1 cut(s) 600
TaqII GACCGA 1 cut(s) 610
TasI AATT 3 cut(s) 58, 625, 638
TatI WGTACW 2 cut(s) 392, 425
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 95, 497
Tru1I TTAA 2 cut(s) 183, 629
Tru9I TTAA 2 cut(s) 183, 629
TscAI CASTG 1 cut(s) 574
TseI GCWGC 2 cut(s) 37, 563
TspDTI ATGAA 2 cut(s) 71, 150
TspGWI ACGGA 3 cut(s) 36, 45, 146
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.