Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTTGAAGGTGCAGCTGGAGCTGGTGCCTATGCGCTGGGTATGATATCTGATGCCTTCAGCTCCTTGGCTTTCACTGCTCTGGCTATTGTAGTTAGTGTTGCTAGAGCTATCGTTGTCGGATTTCCTGTTTTGGCTTACACAGAAATGGTTATGCCAATGTCTAGTAGCCGAGATAGAAGCATGTTTCAAACAAATGATTATAATTTCTCCTCTTTTCAAGAGTGGTGCTGGAAGCAGTTCAATGTGAAACCAAGGCCTACATGGATAACAACAGAGTTTGGTGGACATTTGGCTACTATTTGGTTGGAGCGCAAGGATTCCCTAGCTGGAGCAGTACTTTTGGCCTTAAGGCAACATTGTTATGGAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

125

Amino Acids

13.79

Weight (kDa)

6.05

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	8, 191, 221, 244
AluBI	AGCT	5 cut(s)	17, 23, 63, 110, 329
AluI	AGCT	5 cut(s)	17, 23, 63, 110, 329
AoxI	GGCC	2 cut(s)	257, 345
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	37, 315
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	105, 165, 326
BfrI	CTTAAG	1 cut(s)	349
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	39, 351
BsaJI	CCNNGG	2 cut(s)	66, 254
BseDI	CCNNGG	2 cut(s)	66, 254
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	259, 347
BshNI	GGYRCC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	259, 347
BspANI	GGCC	2 cut(s)	259, 347
BspLI	GGNNCC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	66, 254
BssT1I	CCWWGG	2 cut(s)	66, 254
BstAFI	CTTAAG	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	37, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 77
BstNSI	RCATGY	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	259, 347
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	2 cut(s)	37, 315
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	184, 264
CviQI	GTAC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	66, 254
Eco147I	AGGCCT	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	66, 254
ErhI	CCWWGG	2 cut(s)	66, 254
FaeI	CATG	2 cut(s)	187, 267
FaiI	YATR	7 cut(s)	33, 44, 155, 185, 204, 265, 366
FatI	CATG	2 cut(s)	183, 263
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	3 cut(s)	105, 165, 326
GlaI	GCGC	2 cut(s)	36, 314
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	39, 351
HaeIII	GGCC	2 cut(s)	259, 347
HhaI	GCGC	2 cut(s)	37, 315
Hin1II	CATG	2 cut(s)	187, 267
Hin6I	GCGC	2 cut(s)	35, 313
HinP1I	GCGC	2 cut(s)	35, 313
HinfI	GANTC	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	52, 122
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 77
Hsp92II	CATG	2 cut(s)	187, 267
HspAI	GCGC	2 cut(s)	35, 313
LmnI	GCTCC	4 cut(s)	20, 68, 310, 332
LpnPI	CCDG	7 cut(s)	3, 9, 23, 68, 141, 217, 315
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	3 cut(s)	105, 165, 326
MluCI	AATT	2 cut(s)	205, 372
MmeI	TCCRAC	2 cut(s)	100, 288
MnlI	CCTC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	2 cut(s)	146, 363
MspA1I	CMGCKG	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	20, 77
NlaIII	CATG	2 cut(s)	187, 267
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	197
NspI	RCATGY	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	2 cut(s)	146, 363
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	15
ScaI	AGTACT	1 cut(s)	339
SetI	ASST	6 cut(s)	13, 19, 25, 65, 112, 331
SfaNI	GCATC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	146, 363
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	2 cut(s)	205, 372
SseBI	AGGCCT	1 cut(s)	259
SspMI	CTAG	3 cut(s)	105, 165, 326
StuI	AGGCCT	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	66, 254
TasI	AATT	2 cut(s)	205, 372
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	3 cut(s)	105, 165, 326
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.