RchiOBHm_Chr1g0345461

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005208
Physical Location & Seq
Forward (+)
37789909 .. 37790837
929 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57178

Sequence Viewer

Length: 468 bp
ATGGTGATCCCAAACCAGGTAAAATTTTTCCCTTTTTTCTTACTGTTTCTATTAGTAATTACACCCGGGACTGTGGTGATTATACTGGCTGGAAGGTTTAAGTGGAAGAGAGTTGTTTTCCTTAAGCAGCTTTCATCTGGGTTGCTTCTTGTTACTGGTGAGCTTCAGTTTCTCTTAGAAAAACATGATACACCCATCTGTTTTGCAACAGATTTTGTTCAAGTTTGCTATTGGAAAGTCATAAATACTCTTAACAGCTTATTTCATTTTTTTCTTTCCATTATTAATATTTTTCCCAATAACAAATTGCAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTTGTTGATAATGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTGGGTCTGGCATGAAGCCTTATGAGCTTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

9.3

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 97 - 155 2.5e-12 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 16
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 221, 403
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 5 cut(s) 130, 163, 258, 416, 457
AluI AGCT 5 cut(s) 130, 163, 258, 416, 457
Ama87I CYCGRG 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 127, 416
ApoI RAATTY 1 cut(s) 23
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 323
AsuC2I CCSGG 2 cut(s) 66, 67
AsuHPI GGTGA 3 cut(s) 16, 88, 170
AvaI CYCGRG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 139, 403
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 2 cut(s) 66, 67
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 2 cut(s) 128, 417
BlsI GCNGC 2 cut(s) 129, 418
Bme1390I CCNGG 3 cut(s) 17, 66, 67
BmeT110I CYCGRG 1 cut(s) 65
BmrFI CCNGG 3 cut(s) 17, 66, 67
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 66, 67
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 90, 160
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 90, 160
BseXI GCAGC 2 cut(s) 139, 403
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 82, 377
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 82, 377
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 2 cut(s) 6, 346
BspTI CTTAAG 1 cut(s) 122
BsrI ACTGG 2 cut(s) 90, 160
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 6, 346
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 45, 73
Bst6I CTCTTC 2 cut(s) 101, 347
BstAFI CTTAAG 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 175, 412
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 9, 349
BstMBI GATC 2 cut(s) 6, 346
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 15, 64, 65
BstV1I GCAGC 2 cut(s) 139, 403
BstV2I GAAGAC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 367
Cfr9I CCCGGG 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 15
CviAII CATG 2 cut(s) 185, 442
CviJI RGCY 8 cut(s) 89, 130, 163, 258, 389, 416, 448, 457
CviKI_1 RGCY 8 cut(s) 89, 130, 163, 258, 389, 416, 448, 457
DdeI CTNAG 2 cut(s) 175, 412
DpnI GATC 2 cut(s) 8, 348
DpnII GATC 2 cut(s) 6, 346
Eam1104I CTCTTC 2 cut(s) 101, 347
EarI CTCTTC 2 cut(s) 101, 347
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 188, 445
FaiI YATR 6 cut(s) 83, 186, 242, 409, 443, 453
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 2 cut(s) 82, 377
FatI CATG 2 cut(s) 184, 441
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 128, 417
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 128, 417
GluI GCNGC 2 cut(s) 128, 417
HapII CCGG 1 cut(s) 66
Hin1II CATG 2 cut(s) 188, 445
HinfI GANTC 1 cut(s) 423
HpaII CCGG 1 cut(s) 66
HphI GGTGA 3 cut(s) 16, 88, 170
Hpy188I TCNGA 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 45, 73
HpyCH4V TGCA 3 cut(s) 206, 310, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 2 cut(s) 175, 412
Hsp92II CATG 2 cut(s) 188, 445
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 2 cut(s) 6, 346
Lsp1109I GCAGC 2 cut(s) 139, 403
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 8, 348
MboI GATC 2 cut(s) 6, 346
MboII GAAGA 3 cut(s) 118, 364, 415
MluCI AATT 3 cut(s) 23, 57, 305
MnlI CCTC 2 cut(s) 330, 379
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 4 cut(s) 99, 123, 252, 285
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 3 cut(s) 17, 66, 67
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 454
NciI CCSGG 2 cut(s) 66, 67
NdeII GATC 2 cut(s) 6, 346
NlaIII CATG 2 cut(s) 188, 445
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 423
PkrI GCNGC 2 cut(s) 129, 418
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 99, 123, 252, 285
SatI GCNGC 2 cut(s) 128, 417
Sau3AI GATC 2 cut(s) 6, 346
ScrFI CCNGG 3 cut(s) 17, 66, 67
SetI ASST 7 cut(s) 21, 98, 132, 165, 260, 418, 459
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 3 cut(s) 23, 57, 305
SspI AATATT 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 15, 64, 65
TaaI ACNGT 2 cut(s) 45, 73
TasI AATT 3 cut(s) 23, 57, 305
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 4 cut(s) 99, 123, 252, 285
Tru9I TTAA 4 cut(s) 99, 123, 252, 285
TseI GCWGC 2 cut(s) 127, 416
TspDTI ATGAA 3 cut(s) 123, 254, 458
TspMI CCCGGG 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 122
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.