Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

9909310 .. 9918553

Gene Structure 9244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATGTGATGAGGGAGGAGAAGACGTTGTACGATTATTTGCTGAATCCCAAGAAGTTGCCCTTCCGGCTCTGGATTCCCAAGTCTCTGAGCATGCTAGCTGGTGCTGTTCCCGGATCGTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGGTCGGCGAAGCTTTGCATTCCGATTGTATCGACGGGATTTGGGGCTGCTCCGGGGACGCCGTCTACGGCGGCGTGGAGAGAGAGTTTTGGAATTGGTTTAGCCAATGATTTTCTGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

9.92

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	2 cut(s)	151, 221
AclWI	GGATC	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	2 cut(s)	101, 163
AluI	AGCT	2 cut(s)	101, 163
Alw26I	GTCTC	2 cut(s)	90, 129
AlwI	GGATC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	114, 204
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	196, 234
BcnI	CCSGG	2 cut(s)	114, 204
BcoDI	GTCTC	2 cut(s)	90, 129
BfaI	CTAG	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	198, 222
BlsI	GCNGC	2 cut(s)	199, 223
Bme1390I	CCNGG	2 cut(s)	114, 204
BmrFI	CCNGG	2 cut(s)	114, 204
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	114, 204
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 220, 250
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	67, 114, 128, 203
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	90, 129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	151, 221
BspCNI	CTCAG	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	95, 99
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	2 cut(s)	90, 129
BstMBI	GATC	1 cut(s)	116
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	112, 202
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	95, 99
CseI	GACGC	2 cut(s)	142, 217
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	5 cut(s)	70, 101, 163, 197, 254
CviKI_1	RGCY	5 cut(s)	70, 101, 163, 197, 254
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	198, 222
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	198, 222
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	198, 222
HapII	CCGG	4 cut(s)	67, 114, 128, 203
HgaI	GACGC	2 cut(s)	142, 217
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	46, 76
HpaII	CCGG	4 cut(s)	67, 114, 128, 203
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	90, 174, 267
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	124, 187
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	58, 80, 87, 127, 141, 216
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	34, 154
MfeI	CAATTG	1 cut(s)	137
MluCI	AATT	2 cut(s)	137, 243
MnlI	CCTC	3 cut(s)	6, 10, 138
MspI	CCGG	4 cut(s)	67, 114, 128, 203
MspR9I	CCNGG	2 cut(s)	114, 204
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	114, 204
NdeII	GATC	1 cut(s)	116
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	46, 76
PflFI	GACNNNGTC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	199, 223
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	2 cut(s)	198, 222
Sau3AI	GATC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	114, 204
SetI	ASST	3 cut(s)	29, 103, 165
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	137, 243
SsiI	CCGC	2 cut(s)	151, 221
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	112, 202
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	137, 243
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	46, 76
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.