RLG00000034337

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005208
Physical Location & Seq
Forward (+)
40981357 .. 40983722
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034337

Sequence Viewer

Length: 738 bp
ATGACGAACATTATACAAGTTGCCCTTCCGGCTCTGGATTCCCAAGACTCTGAGCACGCTAGCTGGTGCTGTTCCCGGATCGTCGTCTCCAGTGACGCAATTGAAGAGGAAGCGGTCGGCGACGCTTTGCATTCCGATTGTATCGACGGGATTTGGGGCTGCTCCGGGGACGCCGTCTACGGCAGCGTGGAGAGAGGTGGTGGAAGATTGAGAAGGTTGCTTCTCCTAATTACACCCGGGACTGTGGTGATTATACTGGCTGGAAGGTTTAAGGGGAAGAGAGTTGTTTTCTTTAAGCAGCTTTCATCTGGGTTGCTTCTTGTTACTGTCCTATGTGATTGGCCTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTAAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGACGTTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTGAGGTCTGGCATGTCTTTTAGACAGTCAGCTCTTTTCTTACTTAGGATACTTGTTCCCGTTCTTGTTTGTTTCTCTACTATGATTGTATGTTCTGTTCACATTGAGATCCGAGATTTTGTACTGATCGGCATTGCCTTGCAAGGGATGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

246

Amino Acids

27.02

Weight (kDa)

8.11

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 116 - 201 5.4e-23 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 86, 685
AcsI RAATTY 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 1 cut(s) 726
AgsI TTSAA 2 cut(s) 104, 556
AluBI AGCT 4 cut(s) 63, 301, 569, 614
AluI AGCT 4 cut(s) 63, 301, 569, 614
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 86, 685
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 341, 408
ApeKI GCWGC 4 cut(s) 159, 183, 298, 569
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 1 cut(s) 476
AsuC2I CCSGG 4 cut(s) 76, 166, 237, 238
AsuHPI GGTGA 1 cut(s) 259
AsuNHI GCTAGC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 146, 195, 310, 556
BceAI ACGGC 3 cut(s) 158, 196, 395
BciVI GTATCC 1 cut(s) 624
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 4 cut(s) 76, 166, 237, 238
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 60
BfuI GTATCC 1 cut(s) 624
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 160, 184, 299, 570
BlsI GCNGC 4 cut(s) 161, 185, 300, 571
Bme1390I CCNGG 4 cut(s) 76, 166, 237, 238
BmeT110I CYCGRG 1 cut(s) 236
BmrFI CCNGG 4 cut(s) 76, 166, 237, 238
BmsI GCATC 1 cut(s) 505
BmtI GCTAGC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 4 cut(s) 76, 166, 237, 238
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 165, 236, 351, 411
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse1I ACTGG 2 cut(s) 90, 261
Bse3DI GCAATG 1 cut(s) 714
BseDI CCNNGG 4 cut(s) 165, 236, 351, 411
BseGI GGATG 2 cut(s) 520, 735
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 2 cut(s) 42, 575
BseNI ACTGG 2 cut(s) 90, 261
BseXI GCAGC 4 cut(s) 146, 195, 310, 556
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 343, 410
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 29, 76, 165, 237
BslFI GGGAC 3 cut(s) 182, 253, 530
BslI CCNNNNNNNGG 1 cut(s) 726
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 3 cut(s) 182, 253, 530
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 343, 410
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 78, 499, 690, 708
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 343, 410
BspCNI CTCAG 2 cut(s) 43, 576
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 86, 685
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 2 cut(s) 90, 261
BssECI CCNNGG 4 cut(s) 165, 236, 351, 411
BssMI GATC 4 cut(s) 78, 499, 690, 708
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 244, 328, 609
Bst6I CTCTTC 3 cut(s) 99, 272, 500
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 57, 61
BstDEI CTNAG 4 cut(s) 51, 565, 584, 626
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 520, 735
BstKTI GATC 4 cut(s) 81, 502, 693, 711
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 4 cut(s) 78, 499, 690, 708
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 4 cut(s) 74, 164, 235, 236
BstV1I GCAGC 4 cut(s) 146, 195, 310, 556
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 2 cut(s) 343, 410
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 520, 735
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 57, 61
Cfr9I CCCGGG 1 cut(s) 236
CseI GACGC 3 cut(s) 104, 131, 179
Csp6I GTAC 1 cut(s) 704
CviAII CATG 1 cut(s) 595
CviJI RGCY 9 cut(s) 32, 63, 159, 260, 301, 343, 410, 569, 614
CviKI_1 RGCY 9 cut(s) 32, 63, 159, 260, 301, 343, 410, 569, 614
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 4 cut(s) 51, 565, 584, 626
DpnI GATC 4 cut(s) 80, 501, 692, 710
DpnII GATC 4 cut(s) 78, 499, 690, 708
Eam1104I CTCTTC 3 cut(s) 99, 272, 500
EarI CTCTTC 3 cut(s) 99, 272, 500
Eco130I CCWWGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 1 cut(s) 598
FaiI YATR 8 cut(s) 14, 254, 334, 562, 596, 665, 673, 736
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 548, 580
FaqI GGGAC 3 cut(s) 182, 253, 530
FatI CATG 1 cut(s) 594
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 160, 184, 299, 570
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 160, 184, 299, 570
FspBI CTAG 1 cut(s) 60
GluI GCNGC 4 cut(s) 160, 184, 299, 570
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 343, 410
HapII CCGG 4 cut(s) 29, 76, 165, 237
HgaI GACGC 3 cut(s) 104, 131, 179
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 598
HinfI GANTC 3 cut(s) 38, 47, 576
HpaII CCGG 4 cut(s) 29, 76, 165, 237
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 178, 682
Hpy188I TCNGA 6 cut(s) 52, 136, 404, 504, 585, 695
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 178, 682
Hpy99I CGWCG 3 cut(s) 86, 125, 149
HpyAV CCTTC 5 cut(s) 35, 207, 258, 354, 424
HpyCH4III ACNGT 3 cut(s) 244, 328, 609
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 130, 572, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 4 cut(s) 51, 565, 584, 626
HpySE526I ACGT 1 cut(s) 540
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 78, 499, 690, 708
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 4 cut(s) 146, 195, 310, 556
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 92, 322
MalI GATC 4 cut(s) 80, 501, 692, 710
MboI GATC 4 cut(s) 78, 499, 690, 708
MboII GAAGA 8 cut(s) 116, 216, 289, 433, 436, 439, 517, 568
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 99, 228, 383
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 6 cut(s) 100, 188, 430, 457, 483, 579
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 4 cut(s) 270, 294, 372, 450
MspI CCGG 4 cut(s) 29, 76, 165, 237
MspR9I CCNGG 4 cut(s) 76, 166, 237, 238
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 4 cut(s) 76, 166, 237, 238
NdeII GATC 4 cut(s) 78, 499, 690, 708
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 598
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 38, 576
PflFI GACNNNGTC 2 cut(s) 173, 542
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 4 cut(s) 161, 185, 300, 571
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsrI GAACNNNNNNTAC 2 cut(s) 663, 695
PsuI RGATCY 1 cut(s) 690
PsyI GACNNNGTC 2 cut(s) 173, 542
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
SaqAI TTAA 4 cut(s) 270, 294, 372, 450
SatI GCNGC 4 cut(s) 160, 184, 299, 570
Sau3AI GATC 4 cut(s) 78, 499, 690, 708
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 4 cut(s) 76, 166, 237, 238
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 505
SmaI CCCGGG 1 cut(s) 238
Sse9I AATT 3 cut(s) 99, 228, 383
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 4 cut(s) 74, 164, 235, 236
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 244, 328, 609
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 144, 357
TasI AATT 3 cut(s) 99, 228, 383
TatI WGTACW 1 cut(s) 703
TfiI GAWTC 2 cut(s) 38, 576
Tru1I TTAA 4 cut(s) 270, 294, 372, 450
Tru9I TTAA 4 cut(s) 270, 294, 372, 450
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 4 cut(s) 159, 183, 298, 569
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 294
TspMI CCCGGG 1 cut(s) 236
TspRI CASTG 1 cut(s) 97
Tth111I GACNNNGTC 2 cut(s) 173, 542
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.