Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

1598845 .. 1600103

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAAGAAGCCTCTTATCAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCCATTCAAGATTAATGGTGTTCCTCTTAGAAGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACATCTCTGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCTAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGCAGAGAAGGAGGACAAAAATGTACTCCCGCAGGAGAAAAAGGATGACCAGAAAACTGTTGATACTCCATTGATTGAAGCCATTGAGGGAGTTACAGATTTGAAGACTTATTTGGCTGCAAGGTTTTCTCTCAAGCAAGGAATGAAGCCACATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

129

Amino Acids

14.38

Weight (kDa)

9.02

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	22 - 129	8.8e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AfaI	GTAC	2 cut(s)	167, 246
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	61, 117, 221, 299, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	48, 379
AluI	AGCT	2 cut(s)	48, 379
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	388
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	2 cut(s)	49, 174
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	49, 80, 174
BstF5I	GGATG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 376
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	166, 245
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	9 cut(s)	12, 33, 39, 48, 55, 302, 338, 370, 379
CviKI_1	RGCY	9 cut(s)	12, 33, 39, 48, 55, 302, 338, 370, 379
CviQI	GTAC	2 cut(s)	166, 245
DdeI	CTNAG	3 cut(s)	49, 80, 174
Eco130I	CCWWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	377
FaiI	YATR	2 cut(s)	102, 375
FatI	CATG	1 cut(s)	373
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	377
HincII	GTYRAC	2 cut(s)	127, 142
HindII	GTYRAC	2 cut(s)	127, 142
HpaI	GTTAAC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	91, 127, 142
Hpy188III	TCNNGA	2 cut(s)	6, 61
Hpy8I	GTNNAC	3 cut(s)	91, 127, 142
HpyAV	CCTTC	4 cut(s)	78, 193, 200, 223
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 376
HpyF3I	CTNAG	3 cut(s)	49, 80, 174
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	377
KspAI	GTTAAC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	36, 120, 239, 284
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	388
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	202, 337
MnlI	CCTC	5 cut(s)	23, 87, 172, 226, 301
MseI	TTAA	2 cut(s)	66, 141
MwoI	GCNNNNNNNGC	2 cut(s)	45, 376
NlaIII	CATG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	167, 246
RsaNI	GTAC	2 cut(s)	166, 245
SaqAI	TTAA	2 cut(s)	66, 141
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	167
SetI	ASST	5 cut(s)	50, 126, 147, 347, 381
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	147
TatI	WGTACW	2 cut(s)	165, 244
Tru1I	TTAA	2 cut(s)	66, 141
Tru9I	TTAA	2 cut(s)	66, 141
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	66
XspI	CTAG	1 cut(s)	388
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.