Rh2BG577300

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005208
Physical Location & Seq
Reverse (-)
79373309 .. 79388344
15036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG577300.1

Sequence Viewer

Length: 441 bp
ATGGACTCATACATTCCGCATGCTAAGGCTTTTGTCTTGTTTTTGGTGCCAAACTCATTGGATAGAAGGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTTGGAAAGGCCATGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGACGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTGATGTCTGGCATGTCTTTTAGACAGAGGGTATTTTTCTTCTATGAGCAGAAATCTCGTCAAGGAGGTCTATTGAAACATATATGTCGTCTAGGAGGGTACAAAGATTCTATGAGCATAAATCTCGTCAAGGAGGTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

146

Amino Acids

16.9

Weight (kDa)

9.3

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 22 - 111 8.4e-23 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 398
AgsI TTSAA 2 cut(s) 271, 373
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 271
BcgI CGANNNNNNTGC 4 cut(s) 335, 369, 403, 437
BclI TGATCA 1 cut(s) 214
BfaI CTAG 1 cut(s) 389
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 24, 280
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 23, 313
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 21
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 397
CviAII CATG 3 cut(s) 20, 127, 310
CviJI RGCY 3 cut(s) 29, 125, 284
CviKI_1 RGCY 3 cut(s) 29, 125, 284
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 24, 280
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 23, 130, 313
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 19, 126, 309
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 389
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 1 cut(s) 263
Hin1II CATG 3 cut(s) 23, 130, 313
HinfI GANTC 3 cut(s) 5, 291, 404
Hpy188I TCNGA 2 cut(s) 219, 300
HpyAV CCTTC 2 cut(s) 60, 139
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 24, 280
Hsp92II CATG 3 cut(s) 23, 130, 313
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 66, 276, 291
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 389
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 6 cut(s) 148, 151, 154, 232, 283, 328
MluCI AATT 1 cut(s) 98
MnlI CCTC 8 cut(s) 145, 160, 172, 198, 318, 356, 386, 424
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 87
NcoI CCATGG 1 cut(s) 126
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 23, 130, 313
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 2 cut(s) 23, 313
PaeI GCATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 291, 404
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 214
SetI ASST 3 cut(s) 286, 367, 435
SfaNI GCATC 1 cut(s) 220
SphI GCATGC 1 cut(s) 23
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 389
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 98
TfiI GAWTC 2 cut(s) 291, 404
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 284
Tth111I GACNNNGTC 1 cut(s) 257
XapI RAATTY 1 cut(s) 98
XceI RCATGY 2 cut(s) 23, 313
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.