Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

42063812 .. 42063970

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGCTATCTGGTGCGGTTCCCAGGTCGTCGTCTCGGGTGACGCAATTGAAAAGGAAGCGACCGGTGAAGCTTTGCATTCAGATTGTATCGACGGGATTTGGGGCTGCTCCGGGGACGCCGTCTACGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

52

Amino Acids

5.58

Weight (kDa)

10.27

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	2 cut(s)	14, 128
AcyI	GRCGYC	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	70, 142
AluI	AGCT	2 cut(s)	70, 142
Alw26I	GTCTC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	104
AsiGI	ACCGGT	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	49, 76
AvaI	CYCGRG	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	2 cut(s)	103, 141
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	36
BisI	GCNGC	2 cut(s)	105, 129
BlsI	GCNGC	2 cut(s)	106, 130
Bme1390I	CCNGG	2 cut(s)	22, 111
BmeT110I	CYCGRG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	22, 111
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	20, 110
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	20, 110
BseXI	GCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	62, 110
BslFI	GGGAC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	14, 128
BspLI	GGNNCC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	20, 110
BssNI	GRCGYC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	116
BstMAI	GTCTC	1 cut(s)	36
BstMCI	CGRYCG	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	20, 109
BstV1I	GCAGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	61
CseI	GACGC	2 cut(s)	49, 124
CspAI	ACCGGT	1 cut(s)	61
CviJI	RGCY	3 cut(s)	70, 104, 142
CviKI_1	RGCY	3 cut(s)	70, 104, 142
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	105, 129
Fsp4HI	GCNGC	2 cut(s)	105, 129
GluI	GCNGC	2 cut(s)	105, 129
HapII	CCGG	2 cut(s)	62, 110
HgaI	GACGC	2 cut(s)	49, 124
Hin1I	GRCGYC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	68
HpaII	CCGG	2 cut(s)	62, 110
HphI	GGTGA	2 cut(s)	49, 76
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	2 cut(s)	31, 94
HpyCH4V	TGCA	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	7, 34, 75, 123, 128
Lsp1109I	GCAGC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	44
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	1 cut(s)	142
MspI	CCGG	2 cut(s)	62, 110
MspR9I	CCNGG	2 cut(s)	22, 111
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	22
NciI	CCSGG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	118
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	106, 130
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	105, 129
ScrFI	CCNGG	2 cut(s)	22, 111
SetI	ASST	3 cut(s)	26, 72, 144
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	14, 128
StyD4I	CCNGG	2 cut(s)	20, 109
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.