Rh5AG424100

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005208
Physical Location & Seq
Reverse (-)
73097814 .. 73120235
22422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG424100.1

Sequence Viewer

Length: 423 bp
ATGGAAATGTACTCTGTTTTAGTCCTACGTGATTGGCCTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGTCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCATTGATAAAGTCCATTGACGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTGAGTGTATCTCTAGTTGGACATTCAGCAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

6.31

Isoelectric Point (pI)

18.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 14 - 99 6.1e-23 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 250
AjiI CACGTC 1 cut(s) 356
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 362
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 339
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 290, 323, 421
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 412
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BsaAI YACGTR 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 214, 350
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 193
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 259, 278
BstF5I GGATG 2 cut(s) 214, 350
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 37
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 2 cut(s) 214, 350
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 364
CviJI RGCY 3 cut(s) 37, 263, 349
CviKI_1 RGCY 3 cut(s) 37, 263, 349
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 259, 278
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 256, 365, 375
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 363
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 2 cut(s) 221, 357
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 3 cut(s) 290, 323, 421
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 37
HgaI GACGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 367
HinfI GANTC 2 cut(s) 270, 403
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 98, 198, 279, 385
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 48, 118
HpyCH4IV ACGT 2 cut(s) 28, 355
HpyCH4V TGCA 2 cut(s) 266, 353
HpyF3I CTNAG 2 cut(s) 259, 278
HpySE526I ACGT 2 cut(s) 28, 355
Hsp92II CATG 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 45, 255, 291, 324, 407
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 290, 323, 421
MaeII ACGT 2 cut(s) 28, 355
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 6 cut(s) 127, 130, 133, 211, 262, 380
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 274, 307
MnlI CCTC 5 cut(s) 124, 139, 151, 177, 335
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 66
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 270
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 397
SetI ASST 7 cut(s) 31, 51, 105, 265, 310, 316, 358
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 311
Sse9I AATT 1 cut(s) 77
SspMI CTAG 3 cut(s) 290, 323, 421
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 2 cut(s) 31, 358
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 290, 323, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.