Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

62762580 .. 62765608

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCAATCGGATCGAACGATTCGAACCTGGGACCTGCTCCACATGAAATGTTTTACAATTCTGATTCCTTGTTTCGGGTTCTGGTTTGGGTCGTTGCCCTTCCGGCTTTAGATTCCAAAGTCTCTGAGCACGCTATCTGGTGTGGTTCCCGGATCGTCGTCTTCGGTGACGCAATTGAAGAGGAAGAGCCGGTGAAGCTTCGCATTCCGACTGTATCGACGGGATTTGTGGCTGCTCCGGGGACGCCGTCTACGGTGGCGTGGAGAGAGCTGGTGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

4.5

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	19, 161
AcyI	GRCGYC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	199, 271
AluI	AGCT	2 cut(s)	199, 271
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	19, 161
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	151, 240
AsuHPI	GGTGA	2 cut(s)	179, 205
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	151, 240
BcoDI	GTCTC	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	3 cut(s)	29, 151, 240
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	33, 148
BmrFI	CCNGG	3 cut(s)	29, 151, 240
BpiI	GAAGAC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	151, 240
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	28, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	28, 239
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	104, 151, 191, 239
BslFI	GGGAC	2 cut(s)	45, 256
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	45, 256
BsmI	GAATGC	1 cut(s)	204
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	11, 153
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	33, 148
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	19, 161
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	28, 239
BssMI	GATC	2 cut(s)	11, 153
BssNI	GRCGYC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	214, 256
Bst6I	CTCTTC	2 cut(s)	174, 180
BstACI	GRCGYC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	14, 156
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	11, 153
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 196
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	27, 149, 238
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	2 cut(s)	179, 253
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	107, 190, 199, 233, 271
CviKI_1	RGCY	5 cut(s)	107, 190, 199, 233, 271
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	13, 155
DpnII	GATC	2 cut(s)	11, 153
Eam1104I	CTCTTC	2 cut(s)	174, 180
EarI	CTCTTC	2 cut(s)	174, 180
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	47
FaiI	YATR	1 cut(s)	45
FaqI	GGGAC	2 cut(s)	45, 256
FatI	CATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HapII	CCGG	4 cut(s)	104, 151, 191, 239
HgaI	GACGC	2 cut(s)	179, 253
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	20, 65, 113
HpaII	CCGG	4 cut(s)	104, 151, 191, 239
HphI	GGTGA	2 cut(s)	179, 205
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	4 cut(s)	11, 64, 127, 210
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	161, 223
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	214, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 196
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	11, 153
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	43, 241
Lsp1109I	GCAGC	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	13, 155
MboI	GATC	2 cut(s)	11, 153
MboII	GAAGA	3 cut(s)	154, 191, 197
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	58, 174
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	175, 271
MspI	CCGG	4 cut(s)	104, 151, 191, 239
MspR9I	CCNGG	3 cut(s)	29, 151, 240
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	104, 196
NciI	CCSGG	2 cut(s)	151, 240
NdeII	GATC	2 cut(s)	11, 153
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	33, 148
NmuCI	GTSAC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 20
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	20, 65, 113
PflFI	GACNNNGTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	33, 148
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	11, 153
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	29, 151, 240
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	30, 37, 201, 273
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	2 cut(s)	58, 174
StyD4I	CCNGG	3 cut(s)	27, 149, 238
TaaI	ACNGT	2 cut(s)	214, 256
TaqI	TCGA	3 cut(s)	14, 23, 218
TasI	AATT	2 cut(s)	58, 174
TfiI	GAWTC	3 cut(s)	20, 65, 113
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	60
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.