Rh3AG234900

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005208
Physical Location & Seq
Forward (+)
24258263 .. 24259456
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG234900.1

Sequence Viewer

Length: 369 bp
ATGCACACTGCTATTGTTTTTAGGGTGGTTGGGCCATTCAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTACGTGATTGGCACTTCCACCAAGGTCGATATTTCTGGGGTTAATGTTGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGAGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGGCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

9.37

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 15 - 122 2.7e-42 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 3 cut(s) 40, 128, 304
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 2 cut(s) 317, 358
AluI AGCT 2 cut(s) 317, 358
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 3 cut(s) 32, 156, 279
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 143
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 55
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 99, 159
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
BseDI CCNNGG 2 cut(s) 99, 159
BseGI GGATG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 3 cut(s) 34, 158, 281
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 34, 158, 281
Bsp143I GATC 1 cut(s) 247
BspANI GGCC 3 cut(s) 34, 158, 281
BspHI TCATGA 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 99, 159
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 313, 332
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 287, 355
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 3 cut(s) 34, 158, 281
BtgI CCRYGG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
CciI TCATGA 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 2 cut(s) 343, 353
CviJI RGCY 7 cut(s) 34, 158, 281, 290, 317, 349, 358
CviKI_1 RGCY 7 cut(s) 34, 158, 281, 290, 317, 349, 358
DdeI CTNAG 2 cut(s) 313, 332
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 2 cut(s) 346, 356
FaiI YATR 3 cut(s) 310, 344, 354
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 342, 352
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 3 cut(s) 34, 158, 281
Hin1II CATG 2 cut(s) 346, 356
HinfI GANTC 2 cut(s) 70, 324
Hpy188I TCNGA 2 cut(s) 152, 252
Hpy188III TCNNGA 2 cut(s) 40, 353
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 2 cut(s) 64, 81
HpyCH4V TGCA 2 cut(s) 4, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 355
HpyF3I CTNAG 2 cut(s) 313, 332
HpySE526I ACGT 2 cut(s) 64, 81
Hsp92II CATG 2 cut(s) 346, 356
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 3 cut(s) 99, 309, 324
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 253
MaeII ACGT 2 cut(s) 64, 81
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 5 cut(s) 181, 184, 187, 265, 316
MluCI AATT 1 cut(s) 131
MnlI CCTC 6 cut(s) 178, 193, 205, 231, 280, 360
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 2 cut(s) 45, 120
MwoI GCNNNNNNNGC 2 cut(s) 287, 355
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 346, 356
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 70, 324
PkrI GCNGC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 45
PspPI GGNCC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 45, 120
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 32
SetI ASST 6 cut(s) 67, 84, 105, 319, 338, 360
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 1 cut(s) 131
StyI CCWWGG 1 cut(s) 99
TaiI ACGT 2 cut(s) 67, 84
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 131
TfiI GAWTC 2 cut(s) 70, 324
Tru1I TTAA 2 cut(s) 45, 120
Tru9I TTAA 2 cut(s) 45, 120
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 13
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.