Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Reverse (-)

75197873 .. 75198485

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCACATTGCAATTGTTTGTAGGGTGGTTGGGATGTTGAGACGTGTTCATGCAACTTTGAATTCCTGTTTTGTCAATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGTTAGCCTTATCAACTCGTCATTTATAATTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

72

Amino Acids

8.12

Weight (kDa)

9.03

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	21 - 63	1e-06	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	61, 101
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	61, 101
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	39
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	2 cut(s)	128, 189
CviKI_1	RGCY	2 cut(s)	128, 189
EcoRI	GAATTC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	53
FaiI	YATR	2 cut(s)	51, 209
FatI	CATG	1 cut(s)	49
FokI	GGATG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	4, 11, 53
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	53
LpnPI	CCDG	2 cut(s)	69, 79
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	3 cut(s)	151, 154, 157
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	4 cut(s)	12, 61, 101, 210
MnlI	CCTC	3 cut(s)	148, 163, 175
MseI	TTAA	1 cut(s)	90
MunI	CAATTG	1 cut(s)	12
NlaIII	CATG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	90
SetI	ASST	2 cut(s)	46, 186
SgeI	CNNG	7 cut(s)	56, 62, 78, 96, 124, 142, 211
Sse9I	AATT	4 cut(s)	12, 61, 101, 210
SspI	AATATT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	46
TasI	AATT	4 cut(s)	12, 61, 101, 210
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	38
XapI	RAATTY	2 cut(s)	61, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.