Rh3CG264700

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005208
Physical Location & Seq
Forward (+)
25928468 .. 25929896
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG264700.1

Sequence Viewer

Length: 348 bp
ATGTACAGAGGGCCATTCAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATTGGCACTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTTGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGGGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGGCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

9.47

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 8 - 115 4e-42 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 2 cut(s) 19, 283
AjiI CACGTC 1 cut(s) 44
AluBI AGCT 2 cut(s) 296, 337
AluI AGCT 2 cut(s) 296, 337
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 3 cut(s) 11, 135, 258
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AseI ATTAAT 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 34
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 78, 138
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
BseDI CCNNGG 2 cut(s) 78, 138
BseGI GGATG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 3 cut(s) 13, 137, 260
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 3 cut(s) 13, 137, 260
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 3 cut(s) 13, 137, 260
BspHI TCATGA 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 78, 138
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 292, 311
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 266, 334
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 3 cut(s) 13, 137, 260
BtgI CCRYGG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 247
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 322, 332
CviJI RGCY 7 cut(s) 13, 137, 260, 269, 296, 328, 337
CviKI_1 RGCY 7 cut(s) 13, 137, 260, 269, 296, 328, 337
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 292, 311
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 325, 335
FaiI YATR 4 cut(s) 60, 289, 323, 333
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 321, 331
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 3 cut(s) 13, 137, 260
Hin1II CATG 2 cut(s) 325, 335
HinfI GANTC 2 cut(s) 49, 303
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 19, 332
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 334
HpyF3I CTNAG 2 cut(s) 292, 311
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 325, 335
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 3 cut(s) 78, 288, 303
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 43
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 160, 163, 166, 244, 295
MluCI AATT 1 cut(s) 110
MnlI CCTC 6 cut(s) 157, 172, 184, 210, 259, 339
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 24, 99
MwoI GCNNNNNNNGC 2 cut(s) 266, 334
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 325, 335
PagI TCATGA 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 49, 303
PkrI GCNGC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 24
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 24, 99
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 11
SetI ASST 5 cut(s) 46, 84, 298, 317, 339
SfaNI GCATC 1 cut(s) 232
Sse9I AATT 1 cut(s) 110
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 110
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 49, 303
Tru1I TTAA 2 cut(s) 24, 99
Tru9I TTAA 2 cut(s) 24, 99
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 338
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.