Rw4G001300

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005208
Physical Location & Seq
Reverse (-)
2352705 .. 2356078
3374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001300.1

Sequence Viewer

Length: 600 bp
ATGCTTGACATTGCTTATTACTCCATCTTATTTCGAGGAATCGGAAATTTCAGAGCAGCCCTTCGTCTCCTGCCACAGTCCCGCCTAATTACACCCGAGACTGTGGTGATTATACTTGCTGGAAGGTTTAAGGGGAAGAAAGTTGTTTTCCTTAAGCAGCTTTCATCTGGGTTGCTTCTTCCATTCAAGATTAATTGTGTTCCTTTGAGACGTGTCGATATTTCTGGGGTGAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAAAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGACGTTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTGAGGTCTGGCATGTCTTTTAGACAGTCAGCTCTTTTCTTACTTAGGATACTTGTTCCCGTTCTTGTTTGTTTCTCTACTATGATTGTATGTTCTGTTCACATTGAGATCCGAGATTTTGTACTGATCGGCATTGCCTTGCAAGGGATGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

199

Amino Acids

22.53

Weight (kDa)

9.78

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 71 - 155 8.8e-21 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 2 cut(s) 46, 242
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 1 cut(s) 588
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 2 cut(s) 187, 418
AjiI CACGTC 1 cut(s) 212
AluBI AGCT 3 cut(s) 160, 431, 476
AluI AGCT 3 cut(s) 160, 431, 476
Alw26I GTCTC 3 cut(s) 71, 92, 202
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 56, 157, 431
ApoI RAATTY 2 cut(s) 46, 242
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 118, 241
AvaI CYCGRG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 3 cut(s) 68, 169, 418
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 71, 92, 202
BfrI CTTAAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 3 cut(s) 57, 158, 432
BlsI GCNGC 3 cut(s) 58, 159, 433
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 212
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse3DI GCAATG 2 cut(s) 9, 576
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 382, 597
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMI GCAATG 2 cut(s) 9, 576
BseMII CTCAG 1 cut(s) 437
BseXI GCAGC 3 cut(s) 68, 169, 418
BshFI GGCC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 64, 392
BslI CCNNNNNNNGG 1 cut(s) 588
BsmAI GTCTC 3 cut(s) 71, 92, 202
BsmBI CGTCTC 2 cut(s) 71, 202
BsmFI GGGAC 2 cut(s) 64, 392
BsnI GGCC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 3 cut(s) 361, 552, 570
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 438
BspPI GGATC 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 9, 576
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 3 cut(s) 361, 552, 570
Bst4CI ACNGT 3 cut(s) 78, 103, 471
Bst6I CTCTTC 1 cut(s) 362
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 427, 446, 488
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 382, 597
BstKTI GATC 3 cut(s) 364, 555, 573
BstMAI GTCTC 3 cut(s) 71, 92, 202
BstMBI GATC 3 cut(s) 361, 552, 570
BstNSI RCATGY 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 68, 169, 418
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 552
BstYI RGATCY 1 cut(s) 552
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 382, 597
Csp6I GTAC 1 cut(s) 566
CviAII CATG 1 cut(s) 457
CviJI RGCY 5 cut(s) 59, 160, 269, 431, 476
CviKI_1 RGCY 5 cut(s) 59, 160, 269, 431, 476
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 3 cut(s) 427, 446, 488
DpnI GATC 3 cut(s) 363, 554, 572
DpnII GATC 3 cut(s) 361, 552, 570
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 95
Esp3I CGTCTC 2 cut(s) 71, 202
FaeI CATG 1 cut(s) 460
FaiI YATR 6 cut(s) 113, 424, 458, 527, 535, 598
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 2 cut(s) 64, 392
FatI CATG 1 cut(s) 456
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 57, 158, 432
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 57, 158, 432
GluI GCNGC 3 cut(s) 57, 158, 432
HaeIII GGCC 1 cut(s) 269
Hin1II CATG 1 cut(s) 460
HinfI GANTC 2 cut(s) 39, 438
HphI GGTGA 2 cut(s) 118, 241
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 6 cut(s) 44, 53, 263, 366, 447, 557
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 3 cut(s) 71, 117, 286
HpyCH4III ACNGT 3 cut(s) 78, 103, 471
HpyCH4IV ACGT 2 cut(s) 211, 402
HpyCH4V TGCA 2 cut(s) 434, 586
HpyF3I CTNAG 3 cut(s) 427, 446, 488
HpySE526I ACGT 2 cut(s) 211, 402
Hsp92II CATG 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 361, 552, 570
LpnPI CCDG 6 cut(s) 83, 105, 153, 210, 423, 438
Lsp1109I GCAGC 3 cut(s) 68, 169, 418
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 211, 402
MalI GATC 3 cut(s) 363, 554, 572
MboI GATC 3 cut(s) 361, 552, 570
MboII GAAGA 8 cut(s) 148, 170, 292, 295, 298, 301, 379, 430
MflI RGATCY 1 cut(s) 552
MluCI AATT 4 cut(s) 46, 87, 193, 242
MnlI CCTC 6 cut(s) 29, 292, 307, 319, 345, 441
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 3 cut(s) 129, 153, 192
MspCI CTTAAG 1 cut(s) 152
NdeII GATC 3 cut(s) 361, 552, 570
NlaIII CATG 1 cut(s) 460
NspI RCATGY 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 39, 438
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 3 cut(s) 58, 159, 433
PshBI ATTAAT 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 525, 557
PsuI RGATCY 1 cut(s) 552
PsyI GACNNNGTC 1 cut(s) 404
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
SaqAI TTAA 3 cut(s) 129, 153, 192
SatI GCNGC 3 cut(s) 57, 158, 432
Sau3AI GATC 3 cut(s) 361, 552, 570
SetI ASST 7 cut(s) 128, 162, 214, 405, 433, 452, 478
SfaNI GCATC 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 46, 87, 193, 242
SsiI CCGC 1 cut(s) 82
TaaI ACNGT 3 cut(s) 78, 103, 471
TaiI ACGT 2 cut(s) 214, 405
TaqI TCGA 2 cut(s) 34, 216
TasI AATT 4 cut(s) 46, 87, 193, 242
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 2 cut(s) 39, 438
Tru1I TTAA 3 cut(s) 129, 153, 192
Tru9I TTAA 3 cut(s) 129, 153, 192
TseI GCWGC 3 cut(s) 56, 157, 431
TspDTI ATGAA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 404
Vha464I CTTAAG 1 cut(s) 152
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 46, 242
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.